PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06200g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 240aa    MW: 25676.3 Da    PI: 6.2375
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06200g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-163078254
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                              +y+GVr +k +gr++AeIrdp     r +r++lg+f+ ae+Aa a++aa+++++
  Niben101Scf06200g00001.1 30 HYTGVR-KKLWGRYEAEIRDPL----RnTRVWLGTFDNAEDAAIAYDAAARRFR 78
                              599**9.677**********73....34***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.6263087IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-183088IPR016177DNA-binding domain
SMARTSM003806.1E-293093IPR001471AP2/ERF domain
CDDcd000183.19E-143087No hitNo description
Gene3DG3DSA:3.30.730.103.7E-273088IPR001471AP2/ERF domain
PfamPF008477.7E-93078IPR001471AP2/ERF domain
PRINTSPR003679.7E-83142IPR001471AP2/ERF domain
PRINTSPR003679.7E-85369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAQNVMGDAA VTVAVPAAEN MNGGVSEEIH YTGVRKKLWG RYEAEIRDPL RNTRVWLGTF  60
DNAEDAAIAY DAAARRFRRT KAKTNFPSTT VTKDWSLAPL NLNHGGESSV GSAGSFTYLK  120
QNNLNPGGGS SVGSAASFTY LKQNHQFRHF PAAGGSAPPS ARDYQYLEAL TGAEVSHHDP  180
SSQRGTIAFL GGGDSVSGCG IQTESESSSV LNYNFNDVNQ PTMTANCLNL DLNLPPPDNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-183087563ATERF1
3gcc_A3e-183087563ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591053.11e-137PREDICTED: ethylene-responsive transcription factor 8-like
RefseqXP_016506469.11e-137PREDICTED: ethylene-responsive transcription factor 8-like
TrEMBLR4WAR71e-135R4WAR7_TOBAC; Ethylene response factor #206
STRINGXP_009591053.11e-136(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1519557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.19e-14ethylene response factor 8