PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06207g01008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 900aa    MW: 99093.7 Da    PI: 8.4447
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06207g01008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like54.72.2e-17119177155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSH.....LQkYRl 55 
                               k++l+Wt  LH++F++a++++ G ++A Pktile+m+v+gLt+e+v+       LQkYR+
  Niben101Scf06207g01008.1 119 KTKLVWTDALHNKFLQAIREI-GLDRAYPKTILEVMDVPGLTRENVAKTrcvqiLQKYRI 177
                               689******************.************************85334444999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.3E-6146No hitNo description
PROSITE profilePS5011014.834139IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.609.0E-18117181IPR009057Homeodomain-like
SuperFamilySSF466893.05E-11117181IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-15119165IPR006447Myb domain, plants
PfamPF057587.9E-21824870IPR008896Protein TIC214
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MSADDRDSMV LEGLERGAVF FLLKPISPDD LRDIWQYAAL AKKNKGKGKS VVIEEIQENS  60
SSSKSSSGLP KSPHENVESS SSINVEKGNK EGNKEERKKK SARKYKEAEK EDSSTPPKKT  120
KLVWTDALHN KFLQAIREIG LDRAYPKTIL EVMDVPGLTR ENVAKTRCVQ ILQKYRIFLR  180
KVTEECFRVQ AADTNLANSA TQSTFGSKGP SAISQLPQQN SGSQQLFLKN KSLAETSNRG  240
SSSSSNRRAK PANTLPGYGK AKLVLNKGDS SKITSSNANQ LSTAEATKNQ TSSFIHDNIS  300
TQLLNAAILG NRRITRNLKS LHNSSAAGER HESNQSLVQR DSSLIGFERD KEFAAMLTSY  360
LNQGANRTQL TQLPNNVETG GGSGTVLDQD WSSYFNQGAN RLQLTRLPNN AETEEGSGTI  420
PDQDSEGEKQ SAGLWSSYFN QGANRVQLTR FPNNFETGGG NGTKPGQDCE GEKQSAAMWS  480
SYFNQGANCM QLTRLPNNAE TGGGSGTKPG QDCEGEKRSA VVWSSYLNQG ANRVQLTGFP  540
NNFDAGGGSG TNPGQDCEVE NQSAAMWSSY LNHGANRVNQ GEKQSEVVMW SNNLQLTGFP  600
NNVETGGGSG TKLGQNYGVS MFDKNNATSY SSGIGDLTST FYSQLNVQPF HVQGDRRGVT  660
AEEGSSSQLH HTHQNPELEH GDDEDFWDSL LSLSPYNGDV QWKNLEQLRL LARLLSLNTL  720
HFINLYQFHS LLDLPGSWSF KNGLFGNCPN TSSSNEAFIA TLSQRSHFRN NRVQCHCIKV  780
RRRSEISTDL GSFEEHGVSS QLGAECSSWA GGSGPSVVSP IIPTELRNSV AQIFSILLFI  840
TCVYYLGRIP SPILTKKLKE TSKTEERVEK RWDPDKIDET EEIRVNRKHK INDKFHSRLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-14115183164ARR10-B
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244528.10.0PREDICTED: uncharacterized protein LOC109224402
TrEMBLA0A1J6IL850.0A0A1J6IL85_NICAT; Two-component response regulator orr21
STRINGXP_009781788.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-24response regulator 2