PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06222g02001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 916aa MW: 100022 Da PI: 6.6089

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06222g02001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.8	4.6e-19	337	436	1	98
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 f+k l+ sd+++ grlvlpkk+ae++ + ++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+ Niben101Scf06222g02001.1 337 FEKMLSASDAGRIGRLVLPKKCAEAYfppiS--NPEGLPLKVQDLKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDI 418 89************************543..556667***********99899999999.************* PP EEEEE-SSSEE..EEEEE- CS B3 80 vvFkldgrsefelvvkvfr 98 v+F++++ e++lv++ ++ Niben101Scf06222g02001.1 419 VTFSRIE-PEGKLVMGCRK 436 **887.56656665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.7E-30	333	437	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.31E-19	334	433	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.72E-23	335	436	No hit	No description
Pfam	PF02362	2.3E-16	337	436	IPR003340	B3 DNA binding domain
SMART	SM01019	7.8E-23	337	437	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.082	337	438	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.676	591	641	IPR011124	Zinc finger, CW-type
Pfam	PF07496	5.9E-11	596	638	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 916 aa Download sequence Send to blast
MSSSAAPSSA TKVCFNTNCN QFVERPKKGW RRRTGEFSDL CDRCASAYDD GKFCETFHLK 60 TSGWRSCESC GKQIHCGCIV SFHTFVLLDA GGIECLSCAR KSFILTPNPA WPPPSLFHPL 120 QPERIKDVNN WNPIAGSGPV PWRQAPSLFN GSAVQNELQP RTPFLDDTSS VDRLCLGERP 180 SASSSDNNRK DSCEKLMNGK LKIGVPVTLE NGYAGLNHEE PPKSCISGPP QLSYATNDFS 240 APSFSLTIGS ACKNEPTDHS KVSVSLQQQT TLSTPLGKQL GGHATVDYAG ETQVRNSKTR 300 GDGRGKHHLL PRYWPRITDE ELQQISGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE 360 AYFPPISNPE GLPLKVQDLK GKEWMFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDIVT 420 FSRIEPEGKL VMGCRKASTT LTADQGSEAC SNSNGVVTNG NVNTKSTKFS EEVLANSTKK 480 GTSTSHVAPA DSTIAWAETK MSDDMAMEFL GNNRSICCKR KSSTLGSKSK HLRIGNEDLV 540 ELKVTVVQAQ GLMRPPSSDA PTVIVIEGCE FEEYEDAPII GRPAIPSVDH LGEKIQWVQC 600 EDCFKWRKVP DSALLPSRWT CSENSWDSER SVCSADQELT ADHLRDLLPR INKGLLKLHD 660 LCAAAKNMKA SKQETDVEAL DGLDALANLA ILDEGESLPA SSQATTKHPR HRPGCTCIVC 720 IQPPSGKGPK HKQSCDCIVC KSVKRRFKTL MLKREKKLPE KEAETVCQKL QPQLAGQLLD 780 TGDIQESIDD AGHFSPQRGE LNNEGYADDP NYPNEKKPSA LPFKGEIDLN AQPERDDELS 840 PGSDSGSIMR ILQVAAEQYV RHCGNGSFTG NHENGDGTGE TNPNNCVIVG GTNQTDVDHN 900 RPLSIGTAAS LAPNDQ

Sequence ? help Back to Top

Protein Sequence Length: 916 aa Download sequence Send to blast

MSSSAAPSSA TKVCFNTNCN QFVERPKKGW RRRTGEFSDL CDRCASAYDD GKFCETFHLK  60
TSGWRSCESC GKQIHCGCIV SFHTFVLLDA GGIECLSCAR KSFILTPNPA WPPPSLFHPL  120
QPERIKDVNN WNPIAGSGPV PWRQAPSLFN GSAVQNELQP RTPFLDDTSS VDRLCLGERP  180
SASSSDNNRK DSCEKLMNGK LKIGVPVTLE NGYAGLNHEE PPKSCISGPP QLSYATNDFS  240
APSFSLTIGS ACKNEPTDHS KVSVSLQQQT TLSTPLGKQL GGHATVDYAG ETQVRNSKTR  300
GDGRGKHHLL PRYWPRITDE ELQQISGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE  360
AYFPPISNPE GLPLKVQDLK GKEWMFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDIVT  420
FSRIEPEGKL VMGCRKASTT LTADQGSEAC SNSNGVVTNG NVNTKSTKFS EEVLANSTKK  480
GTSTSHVAPA DSTIAWAETK MSDDMAMEFL GNNRSICCKR KSSTLGSKSK HLRIGNEDLV  540
ELKVTVVQAQ GLMRPPSSDA PTVIVIEGCE FEEYEDAPII GRPAIPSVDH LGEKIQWVQC  600
EDCFKWRKVP DSALLPSRWT CSENSWDSER SVCSADQELT ADHLRDLLPR INKGLLKLHD  660
LCAAAKNMKA SKQETDVEAL DGLDALANLA ILDEGESLPA SSQATTKHPR HRPGCTCIVC  720
IQPPSGKGPK HKQSCDCIVC KSVKRRFKTL MLKREKKLPE KEAETVCQKL QPQLAGQLLD  780
TGDIQESIDD AGHFSPQRGE LNNEGYADDP NYPNEKKPSA LPFKGEIDLN AQPERDDELS  840
PGSDSGSIMR ILQVAAEQYV RHCGNGSFTG NHENGDGTGE TNPNNCVIVG GTNQTDVDHN  900
RPLSIGTAAS LAPNDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	7e-64	315	438	2	125	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616961.1	0.0	PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X2
TrEMBL	A0A1S4DLG5	0.0	A0A1S4DLG5_TOBAC; B3 domain-containing protein Os07g0563300-like isoform X2
STRING	XP_009616960.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7128	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	1e-149	high-level expression of sugar-inducible gene 2