PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06388g04001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 463aa    MW: 50248.9 Da    PI: 7.5217
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06388g04001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH216e-071982301955
                               HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +f+ Lr ++P++    ++K +Ka+ L +++eYI+ Lq
  Niben101Scf06388g04001.1 198 RFQMLRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 230
                               79*********9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.981179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-10197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-13197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-4198230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.24E-6198234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MELPQPRPFG TEGRKTTHDF LSLYSPVQQD PTPPQGGFLK THDFLQPLEQ AEKALRKEED  60
KVEVVDVEKP AAPVAFPSVE HILPGGIGTY SISYLHQRVP KPEASLFAVA QATSTDRNDE  120
NSNCSSYTGG SGFTLWDESA VKKGKTGKEN SGGDRHVLRE AGLNTGGGQP TTSLEWQSQS  180
SSNHKHNTTA ISSLSSARFQ MLRGIIPNSD QKRDKASFLL EVIEYIHFLQ EKVHKYEESY  240
QGWENEPLKL PLTILKQSKC LRTTQGASNH PQGTTNASGA APTYAVKFDE NIMGISSTNP  300
FNGQKVEPHI STTSLKESSQ RPGLTNKVTT PSMHPNAFPF CGASSTAALY SSKLTADTAK  360
LESKSHPQFS VSRSHMTDHA IPNANPKGQD VSIESGTISI SSAYSQGLLN TLTLALQNSG  420
VDLAQANISV QIDLGKRANG RLHSSASTVK AFRADDDKQQ FQV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019243746.11e-166PREDICTED: transcription factor BIM1 isoform X1
TrEMBLM1C9Y70.0M1C9Y7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000630260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-41BES1-interacting Myc-like protein 2