PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06392g01011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family S1Fa-like
Protein Properties Length: 81aa    MW: 9347.22 Da    PI: 11.1194
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06392g01011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA92.53.4e-2929811870
                      S1FA 18 llvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                              +l vgglllvfl gny+ly+yaq +lPP+kkkPvskkk +re+lkqGv++PGe
  Niben101Scf06392g01011.1 29 MLNVGGLLLVFLAGNYLLYIYAQETLPPKKKKPVSKKKPRRERLKQGVSAPGE 81
                              5789************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190136.0E-51681No hitNo description
PfamPF046896.3E-282981IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MDINLSYILQ NPNRKVKLEF PNRKIRPKML NVGGLLLVFL AGNYLLYIYA QETLPPKKKK  60
PVSKKKPRRE RLKQGVSAPG E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.26e-19DNA-binding protein S1FA
RefseqXP_024026346.16e-19DNA-binding protein S1FA
TrEMBLW9SCA31e-17W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_010104121.12e-18(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53370.14e-07S1FA-like DNA-binding protein