PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06394g05004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YC
Protein Properties Length: 300aa    MW: 33751.8 Da    PI: 4.2153
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06394g05004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC698e-2228943399
                     NF-YC 33 dedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99
                              ++  +m+sa++ +l++ka e+fileltlr+w++ae+ k rtlk+ dia a+ + +  dfl divp +
  Niben101Scf06394g05004.1 28 NKTQQMVSAHSIALFAKATEMFILELTLRAWMQAEQVKCRTLKRYDIARAIRNEELLDFLCDIVPLQ 94
                              56679***********************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001258.1E-82779IPR007125Histone H2A/H2B/H3
Gene3DG3DSA:1.10.20.104.0E-182992IPR009072Histone-fold
SuperFamilySSF471139.78E-142992IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEFPKSSSAL SSEMQKPVGI HSCLPSSNKT QQMVSAHSIA LFAKATEMFI LELTLRAWMQ  60
AEQVKCRTLK RYDIARAIRN EELLDFLCDI VPLQSYKVEE ANYGQGNEFH PAYQMVQPIN  120
FPVEEEANDG QGNEFHPAYE MLQLQPNNIP FKVLKPHFLQ YQFQVEEEAL DVQGNEFHQA  180
YQMVHPNNIP LQQQNQFQVE EEAIDGQGNE FLAAYQMVQP NDVPVEGEAN GGQGNEFHPA  240
YQMVQPNNIP VGDSAFQYYL ASFTSIQGIP APLMLPPAIN SSAEAEFTSD GFALDNKEGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-1532923494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016495199.11e-164PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X14
TrEMBLA0A1S4C2C51e-162A0A1S4C2C5_TOBAC; nuclear transcription factor Y subunit gamma-like isoform X14
STRINGXP_009594862.11e-160(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139181113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.13e-20nuclear factor Y, subunit C1