PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06413g02012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 107aa    MW: 12580.5 Da    PI: 5.2289
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06413g02012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.49.6e-106193237
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfg 37
                              +y GVr ++ +g+++AeIrd + ng   r++lg+f 
  Niben101Scf06413g02012.1 61 HYIGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFI 93
                              699******.**********44465..*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.0E-46198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-136192IPR001471AP2/ERF domain
PfamPF008471.3E-46192IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-96192IPR016177DNA-binding domain
PROSITE profilePS5103212.4576192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MNTSSCSELL FDSDWPPLFL NTDDVEEQKM ISWEKSVSEA DFFEVIKCEK VQELPNKEEN  60
HYIGVRKRPW GKFAAEIRDS TRNGIRVWLG TFILLKKLLW LMTKLPS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764685.14e-59PREDICTED: ethylene-responsive transcription factor 1B-like
TrEMBLA0A1U7VS019e-58A0A1U7VS01_NICSY; ethylene-responsive transcription factor 1B-like
STRINGXP_009764685.12e-58(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-18ethylene response factor 1