PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06439g02001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 920aa MW: 102186 Da PI: 5.5962

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06439g02001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.8e-29	527	578	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki ++ Niben101Scf06439g02001.1 527 AEKHISLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIGKV 578 589**********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.95	511	598	IPR003035	RWP-RK domain
Pfam	PF02042	4.5E-25	531	578	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.92E-19	815	903	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.4E-21	816	898	No hit	No description
SMART	SM00666	2.8E-20	819	901	IPR000270	PB1 domain
PROSITE profile	PS51745	20.126	819	901	IPR000270	PB1 domain
Pfam	PF00564	3.2E-16	820	900	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 920 aa Download sequence Send to blast
MSSHIDETFN NAMEMMNFEA YAGWCSSPHA IEQIFASYPS FSPINPMSIN YAPFEQLNYE 60 QEFPCEGKNW MFQQKNDDQF RDEADYVTDT DNCLIPKSPC QSFPERMLKA LELFKESSGG 120 GILAQVWIPM KNSDDHYILS TCEEPFLLDQ ALSGYREVSR KFTFDVEMKP GSFPGLPGRV 180 FTSRIPEWTS NVQYYKEAEY LRVRYAVDHE VRGSIALPVL EDDGHDSPCC AVLELVTTKE 240 KSNFDLEMVH FCRALQAVNL RSTTPPQFTS KNLSKNQIAA LAEIKDVLRA VCHAHSLPLA 300 LTWIPRICTG GCIASSDENR ILCVENTACY VSDKEMHGFL HACKGHDLEE GQGIVGKSLQ 360 SNHPFFYPDV KEYHISEYPL VHHARKFGLN AAVAIRLRSI LTGDDDYVLE LFLPVDMKGS 420 TEQQLLLNNL SRTMQRICKS LRTISHAELV GQGGAKCGLQ SESVLDLTPI DLKRKISQHS 480 LLGSTLDLSK ATLDVRDSEI AGMEADNSCE QRRSVSRRQK EKKRSAAEKH ISLSVLQQYF 540 SGSLKDAAKS IGVCPTTLKR ICRQHGIQRW PSRKIGKVNR SLLNIQTVLK SVQGIEGGLK 600 FDPATGGLVA TNSILQDFDS EKGILLPWKD VCVKNPDSDF QDDVSVLQTS CIDNHDSVVK 660 MEEDTHVDGN QLAESNSPFS GFCHGCKLAA LDAGWPASQD IMQCTNSKNV SLGSFRTKEG 720 CRSCGLSTSN LKLDNFGCHF ISRCPHSMPD ADDVETKTRA SNEMDGDDVI EHNKGSSSGM 780 TDLSNVSGSI VNGSSSSSHS FGERKHTKVK ASSEDGASQI TIKATYKEDR IRFKFEPSAG 840 CFQLYEEVAK RFKLQIGAFQ LEYLDDEDEW VMLVNAEDLH ECLEILDSLG TRCVKFLVQD 900 VSCAIGSSGS STSCFLTSGS

Sequence ? help Back to Top

Protein Sequence Length: 920 aa Download sequence Send to blast

MSSHIDETFN NAMEMMNFEA YAGWCSSPHA IEQIFASYPS FSPINPMSIN YAPFEQLNYE  60
QEFPCEGKNW MFQQKNDDQF RDEADYVTDT DNCLIPKSPC QSFPERMLKA LELFKESSGG  120
GILAQVWIPM KNSDDHYILS TCEEPFLLDQ ALSGYREVSR KFTFDVEMKP GSFPGLPGRV  180
FTSRIPEWTS NVQYYKEAEY LRVRYAVDHE VRGSIALPVL EDDGHDSPCC AVLELVTTKE  240
KSNFDLEMVH FCRALQAVNL RSTTPPQFTS KNLSKNQIAA LAEIKDVLRA VCHAHSLPLA  300
LTWIPRICTG GCIASSDENR ILCVENTACY VSDKEMHGFL HACKGHDLEE GQGIVGKSLQ  360
SNHPFFYPDV KEYHISEYPL VHHARKFGLN AAVAIRLRSI LTGDDDYVLE LFLPVDMKGS  420
TEQQLLLNNL SRTMQRICKS LRTISHAELV GQGGAKCGLQ SESVLDLTPI DLKRKISQHS  480
LLGSTLDLSK ATLDVRDSEI AGMEADNSCE QRRSVSRRQK EKKRSAAEKH ISLSVLQQYF  540
SGSLKDAAKS IGVCPTTLKR ICRQHGIQRW PSRKIGKVNR SLLNIQTVLK SVQGIEGGLK  600
FDPATGGLVA TNSILQDFDS EKGILLPWKD VCVKNPDSDF QDDVSVLQTS CIDNHDSVVK  660
MEEDTHVDGN QLAESNSPFS GFCHGCKLAA LDAGWPASQD IMQCTNSKNV SLGSFRTKEG  720
CRSCGLSTSN LKLDNFGCHF ISRCPHSMPD ADDVETKTRA SNEMDGDDVI EHNKGSSSGM  780
TDLSNVSGSI VNGSSSSSHS FGERKHTKVK ASSEDGASQI TIKATYKEDR IRFKFEPSAG  840
CFQLYEEVAK RFKLQIGAFQ LEYLDDEDEW VMLVNAEDLH ECLEILDSLG TRCVKFLVQD  900
VSCAIGSSGS STSCFLTSGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019237099.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A1J6K1Y6	0.0	A0A1J6K1Y6_NICAT; Protein nlp9
STRING	XP_009800914.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]