PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06473g01014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 70aa    MW: 7767.87 Da    PI: 5.5006
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06473g01014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.31e-092331347
                       AP2 13 grWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47
                              g+Wv+eIr+p   g +  r +lg++  +e Aa a++
  Niben101Scf06473g01014.1  2 GKWVSEIRVP---G-SsERLWLGTYTNPEAAAIAHD 33
                              9********8...4.34*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.734150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-15248IPR001471AP2/ERF domain
SMARTSM003802.4E-5254IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-10248IPR016177DNA-binding domain
CDDcd000186.17E-13248No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MGKWVSEIRV PGSSERLWLG TYTNPEAAAI AHDIDYYCLS SLDELNFPFM LPANVAEVCA  60
KGGLKCWHGH
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767328.11e-27PREDICTED: ethylene-responsive transcription factor ERF020-like
RefseqXP_016443781.11e-27PREDICTED: ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I81e-17ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A1S3XV093e-26A0A1S3XV09_TOBAC; ethylene-responsive transcription factor ERF020-like
TrEMBLA0A1U7VLT93e-26A0A1U7VLT9_NICSY; ethylene-responsive transcription factor ERF020-like
STRINGXP_009767328.15e-27(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94942028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.14e-20ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]