PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06514g03006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GeBP

Protein Properties

Length: 431aa MW: 47878.1 Da PI: 4.9942

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06514g03006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	105.6	3.9e-33	172	264	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdq 86 ++rlws+eD++++L+G+ +fka++g++p + d++af++f+k+++ ++vsksq+++K+rrLKkKf ++vk ++p+fsk+hd Niben101Scf06514g03006.1 172 PSRLWSDEDQLAILKGMAEFKAQKGSEPNAtDMSAFHDFIKGKLLVEVSKSQVTDKLRRLKKKFLNNVKI---SDDPVFSKPHDY 253 68**********************99988***********************************...99****** PP DUF573 87 kifelskkiWg 97 +felskkiWg Niben101Scf06514g03006.1 254 LMFELSKKIWG 264 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.2E-29	173	264	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MAPKSKSRLV DQPPSASSSE QDPQQAEEEE AQSEEEEEQE EESGEEESDE EEEEPKTAPP 60 LEKKPTSQTP LQTPKNKPQS SSSESGTEDG SGSDSDSESG QSQPSPSASD FTVKPSVPAA 120 KSPSKPLSKR PQETQQQQQA QKEKHSRPDK KPKISEEDSK VSEEKKSAAT TPSRLWSDED 180 QLAILKGMAE FKAQKGSEPN ATDMSAFHDF IKGKLLVEVS KSQVTDKLRR LKKKFLNNVK 240 ISDDPVFSKP HDYLMFELSK KIWGDAGTSN TNGVNEIVNN GTNGKAKKTV DVVMKSTAEP 300 KKSAKVSTFT KPKDDEKPKE DEKRAAVKEV NKEDVVVKGD DRQDFRSKYP NLAASFSLPA 360 MSSIFPNGVD IFKENMSLIA SDKAKVLEEK WKKLHDDEDD LMLKRLDLIR EHYKLVVDAR 420 RAPDDKCLPV S

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MAPKSKSRLV DQPPSASSSE QDPQQAEEEE AQSEEEEEQE EESGEEESDE EEEEPKTAPP  60
LEKKPTSQTP LQTPKNKPQS SSSESGTEDG SGSDSDSESG QSQPSPSASD FTVKPSVPAA  120
KSPSKPLSKR PQETQQQQQA QKEKHSRPDK KPKISEEDSK VSEEKKSAAT TPSRLWSDED  180
QLAILKGMAE FKAQKGSEPN ATDMSAFHDF IKGKLLVEVS KSQVTDKLRR LKKKFLNNVK  240
ISDDPVFSKP HDYLMFELSK KIWGDAGTSN TNGVNEIVNN GTNGKAKKTV DVVMKSTAEP  300
KKSAKVSTFT KPKDDEKPKE DEKRAAVKEV NKEDVVVKGD DRQDFRSKYP NLAASFSLPA  360
MSSIFPNGVD IFKENMSLIA SDKAKVLEEK WKKLHDDEDD LMLKRLDLIR EHYKLVVDAR  420
RAPDDKCLPV S

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269\|PubMed:12028578}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009777843.1	0.0	PREDICTED: mediator-associated protein 1-like
Refseq	XP_016481909.1	0.0	PREDICTED: mediator-associated protein 1-like
Swissprot	Q94IK2	1e-135	STK_SOLTU; STOREKEEPER protein
TrEMBL	A0A1S4AZB4	0.0	A0A1S4AZB4_TOBAC; mediator-associated protein 1-like
TrEMBL	A0A1U7WGR3	0.0	A0A1U7WGR3_NICSY; mediator-associated protein 1-like
STRING	XP_009777843.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2369	20	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	2e-17	DNA-binding storekeeper protein-related transcriptional regulator