PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06525g00011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 458aa    MW: 50554 Da    PI: 7.8945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06525g00011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-09307354455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               ah+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Niben101Scf06525g00011.1 307 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 354
                               8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.53E-11301358No hitNo description
SuperFamilySSF474591.22E-16301366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-17303370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.682303353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6307354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11309359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEKGNLFTND GNTTMGNYGI GIQENGQIQN CFFNPNWENS DPFESALSSM VSSPNANIPN  60
GSSTNNSSGD NFVLRELIGR LGSICNSREL SPNSNMINSS TNNSCYTTPL NSPPKLNLSM  120
MGNLSHNQLP QFSADPGFAE RAAKFSCFAN KTFKSFNDAE LLQHNRQIVA QPNLESGKLS  180
RVSSNQSIKV SSGSQIQEFK DVNLAPKNSE FGDSRENSSV SEQIPVGEND TISRKRKSVS  240
KGKSKNANVS LEKNESNAKR SKSEENNGNV KAKEEEKAAK TEEEKAVPEP PKDYIHVRAR  300
RGQATDAHSL AERVRREKIS ERMKLLQDLV PGCNKVTGKA VMLDEIINYV QSLQRQVEFL  360
SMKLATMFQS RGSLAQNMYP SESSAQAFPY GFQSQPGQNF HKGNGQNFHK GTEFPFPINS  420
LNNNLSRNSS MQLPSLDGYV ESTPQVPTFF EDDLNSLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232237SRKRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788675.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A1U7XQA20.0A0A1U7XQA2_NICSY; transcription factor bHLH62-like
STRINGXP_009788675.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.17e-64bHLH family protein