PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06551g00018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 71aa    MW: 8336.7 Da    PI: 11.2903
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06551g00018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.23.4e-262167450
                              -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                    SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                              ++ +nrqvtfskRrngilKK +ELSvLCd++va+i+fs++g+l  ys
  Niben101Scf06551g00018.1 21 NSLTNRQVTFSKRRNGILKKIYELSVLCDVDVAIIMFSPSGRLTHYS 67
                              6779****************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004042.2E-181232IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-201869IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.671870IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-222168IPR002100Transcription factor, MADS-box
PfamPF003196.0E-242466IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-183247IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-184768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MISFPPFVFG NQYFHNPKNT NSLTNRQVTF SKRRNGILKK IYELSVLCDV DVAIIMFSPS  60
GRLTHYSRKR R
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015160390.17e-28PREDICTED: agamous-like MADS-box protein AGL104
RefseqXP_019254059.12e-26PREDICTED: agamous-like MADS-box protein AGL104
SwissprotQ9LM467e-19AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A0V0GZA33e-27A0A0V0GZA3_SOLCH; Putative MADS-box transcription factor 58-like (Fragment)
STRINGSolyc05g051830.2.13e-25(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-21AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]