PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06589g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 452aa    MW: 50846.4 Da    PI: 6.8432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06589g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.4e-11266309755
                               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               + Err R++iN++f  L ++lP+      +K++K++ L +++eY+k+L+
  Niben101Scf06589g00008.1 266 ISERRQREKINERFMHLASMLPTG-----GKVDKISLLDETIEYMKELE 309
                               78*********************8.....8****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.008259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-15262323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.16E-10262313No hitNo description
Gene3DG3DSA:4.10.280.102.5E-15264324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-13265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-9266309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MLLTKSSLSH QSASIQVLED PNLIQQIKNS FEVDHSVMSK MPNYVSDDAK NDTNIVSRKL  60
NHNVLEIEAY PVEMNNSSPH DSSNGFVANQ EAEDSLMVVG IIGETSQAQS RKFVDDNMSN  120
GVHNSLNSSD CISQNYEKLS PLSSGEKETK PCLIDRQEHN QNKLHLLDHQ RDDAQYQAVI  180
STLLKSSDQL TLGPHFRNIN KKSSFTGWKN NTQTPSMGTA QKLLKKVLLE VPRMHGDVTH  240
KFSRENRKKN GLWRPEVDDI DRSRVISERR QREKINERFM HLASMLPTGG KVDKISLLDE  300
TIEYMKELER RVQELEARSG KKTNETAEQT SDNCGTSKFN DIKGSSLKRK ARDLDGLEPE  360
SCNELMKGSS ADSIVINMTD KEVSIKMRCL WSEGLLLEIM EALTGLQMDC HTVQSSKIDG  420
ILSIAIESKS NGFKAVSVGA LREVLQRVVW KS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779732.10.0PREDICTED: transcription factor GLABRA 3-like isoform X3
TrEMBLA0A1U7WIG40.0A0A1U7WIG4_NICSY; transcription factor GLABRA 3-like isoform X3
STRINGXP_009779730.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-82bHLH family protein