PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06603g03002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 320aa    MW: 36208.8 Da    PI: 5.4135
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06603g03002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.75.5e-24113174159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                               +dDg++WrKYGqK++  s++pr+Y+rCt++   +C+++k+v++ +++p ++ +tY g+H+++
  Niben101Scf06603g03002.1 113 VDDGHAWRKYGQKQILHSTYPRHYFRCTHKydqKCQATKQVQKIQDNPPLFRTTYYGNHTCK 174
                               59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-2598174IPR003657WRKY domain
PROSITE profilePS5081119.382108171IPR003657WRKY domain
SuperFamilySSF1182909.02E-24109175IPR003657WRKY domain
SMARTSM007742.9E-35113175IPR003657WRKY domain
PfamPF031065.9E-23114174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MESPLPEKSS ADLKRAIDGL IRGQEFTRQL KEIIKQPLAT IMAEDLVGKI MNSFSETLSV  60
INSGESDEDT AEVKSPEDSS GSCKSTTSFK DRRGCYKRRK TSETNTKETS DLVDDGHAWR  120
KYGQKQILHS TYPRHYFRCT HKYDQKCQAT KQVQKIQDNP PLFRTTYYGN HTCKPFPRVS  180
QMILDTPIHG DSSILLSFDR NNNNYSSVQN VNHNYQPYNI PTFPSIKQET NEEVFQRSCT  240
SYPKIEDQNQ SSNSDYSLLA NDDHLSTPAA FEASGGHMAA ALSTEVISSG VYSSCTTSTD  300
NLEIDFDFEE SLWNFEGYNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-22113174869OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597703.10.0PREDICTED: probable WRKY transcription factor 70
RefseqXP_016436463.10.0PREDICTED: probable WRKY transcription factor 70
SwissprotK4BIZ94e-52WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBLA0A1S3X9M40.0A0A1S3X9M4_TOBAC; probable WRKY transcription factor 70
STRINGXP_009597703.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-44WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]