PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06618g00004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 424aa MW: 47273.8 Da PI: 6.1249

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06618g00004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.3	5.8e-08	338	378	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L Niben101Scf06618g00004.1 338 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 378 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.332	329	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-14	334	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-13	335	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.9E-12	337	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-5	338	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.58E-4	351	383	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MGSLNWDEIP VFQEFGASFD PIHVISNWNM PQRQEAAVRL AADSMAAKSA ADLSRDCVVN 60 GFSSSPTLNM PNYVSDNYPL LNGLMADFSS NGQVQEIKPT PELLSNTCSL ESLDCLLSAT 120 TTNNTDTSIE DDGMSMIFAD NSKSLWIFNS SSESAIHNAS SEALKQSPGY QQLMTCQSGH 180 KILEEEERKR KPHKPINANE LDETVSQSSP NHKYNKRNHN QALENSPSEF NLFESDSLNG 240 DCGNFQLISE KQSKSKKPRL ITENYNKPRP SSSNINFQQA SSSVSSIDQE PDPEAIAQMK 300 EMIYRAAAFR PVNFGPEAPE KPKRKNVRIS TDPQTVAARQ RRERISERIR VLQRLVPGGS 360 KMDTASMLDE AANYLKFLRS QVKALEAIGQ KQDPFSSIPF NYPFPMQLPH FPLQNPNPIH 420 GPKS

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MGSLNWDEIP VFQEFGASFD PIHVISNWNM PQRQEAAVRL AADSMAAKSA ADLSRDCVVN  60
GFSSSPTLNM PNYVSDNYPL LNGLMADFSS NGQVQEIKPT PELLSNTCSL ESLDCLLSAT  120
TTNNTDTSIE DDGMSMIFAD NSKSLWIFNS SSESAIHNAS SEALKQSPGY QQLMTCQSGH  180
KILEEEERKR KPHKPINANE LDETVSQSSP NHKYNKRNHN QALENSPSEF NLFESDSLNG  240
DCGNFQLISE KQSKSKKPRL ITENYNKPRP SSSNINFQQA SSSVSSIDQE PDPEAIAQMK  300
EMIYRAAAFR PVNFGPEAPE KPKRKNVRIS TDPQTVAARQ RRERISERIR VLQRLVPGGS  360
KMDTASMLDE AANYLKFLRS QVKALEAIGQ KQDPFSSIPF NYPFPMQLPH FPLQNPNPIH  420
GPKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	338	343	RQRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019244073.1	0.0	PREDICTED: transcription factor bHLH87-like
Refseq	XP_019244074.1	0.0	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2	4e-77	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A1J6J2T1	0.0	A0A1J6J2T1_NICAT; Transcription factor bhlh87
STRING	XP_009614250.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4350	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	8e-68	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]