PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06621g02016.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 181aa MW: 20478.4 Da PI: 4.5385

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06621g02016.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.5	3e-17	36	105	19	82
trihelix 19 erlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +r r+++ + +p+W +vs+++r+rg +r+p+qC+++w+n+ +++kik++e++ + s+s + + Niben101Scf06621g02016.1 36 HRGRKSSsvigsdKPEPKWNSVSSYCRQRGANRGPVQCRKRWSNMISDFRKIKAWESQTNGSSESYWIMN 105 4444432333333889*****************************************9755555566555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.5E-10	40	104	No hit	No description
SuperFamily	SSF46689	8.21E-5	52	86	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MNENTTSLAG MVDGQQKPTE VTDDKKGKKI AEERTHRGRK SSSVIGSDKP EPKWNSVSSY 60 CRQRGANRGP VQCRKRWSNM ISDFRKIKAW ESQTNGSSES YWIMNDKVDY GIETEEEEEE 120 EENEEENTEA EAISHTDEYI MADDVMFPAM EEIGSNPLKE GTAKDKKAKS IPSPTPISDS 180 Y

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009773262.1	3e-91	PREDICTED: trihelix transcription factor GT-2-like
Refseq	XP_016502485.1	3e-91	PREDICTED: trihelix transcription factor ASR3-like
TrEMBL	A0A1S4CN58	8e-90	A0A1S4CN58_TOBAC; trihelix transcription factor ASR3-like
TrEMBL	A0A1U7VZR6	8e-90	A0A1U7VZR6_NICSY; trihelix transcription factor GT-2-like
STRING	XP_009773262.1	1e-90	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1786	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-32	Trihelix family protein