PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06623g00012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 274aa    MW: 30314.9 Da    PI: 5.89
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06623g00012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.23e-08165212455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++iN+++  L+el+P +     k +  a +L   ++Y++sLq
  Niben101Scf06623g00012.1 165 SHSLAERLRREKINEKLRCLQELVPGC----YKTMGMAVMLDVIINYVRSLQ 212
                               8*************************8....355888888888888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-16159229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-10159215No hitNo description
Gene3DG3DSA:4.10.280.104.1E-15161222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.231161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-5165212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-7167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGDHSAADRF QALNSSSSSS PFMNSNNMEL LNSINLEPEN FSSNINQHGF LALSNEDFSN  60
HHQLPNMAFH TDMNLSDSIS AQNIYDPAAA AAAQFFTLGG PSNYGCSSNM NSIPESESML  120
NNNIPTPPPL KCEGRKRKRN NQKEAAEKPR EVVHVRAKRG QATDSHSLAE RLRREKINEK  180
LRCLQELVPG CYKTMGMAVM LDVIINYVRS LQNQIDFLSM KLSAASLFYD FNSSEIDDMD  240
SMQGTNGYAA QGMGKIVGEG YGGFPPQFQT SWPL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779032.10.0PREDICTED: transcription factor bHLH75-like
TrEMBLA0A1U7WGF50.0A0A1U7WGF5_NICSY; transcription factor bHLH75-like
STRINGXP_009779032.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90691724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.15e-60bHLH family protein