PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06662g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 125aa    MW: 14357.8 Da    PI: 4.7404
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06662g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000387496123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C+ C+k F+++  L  H  +H
  Niben101Scf06662g01002.1 74 FQCKACKKIFNSHQALGEHRASH 96
                              89*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-571100No hitNo description
PROSITE profilePS5015710.1874101IPR007087Zinc finger, C2H2
PfamPF139121.5E-77498IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MVDNSEKNET ISSVLHYCRY YGYDKDQYGS REEDGEEDED LANCLVMLLN KSYDLSDNNK  60
ETKNKAKEIE KGMFQCKACK KIFNSHQALG EHRASHKKVK GCYAAKLDDN NNNTDIDEDF  120
ISPTD
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489071.12e-49PREDICTED: zinc finger protein ZAT1-like
RefseqXP_018623628.12e-49PREDICTED: zinc finger protein ZAT1-like
SwissprotO654995e-14ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A1S4BJK94e-48A0A1S4BJK9_TOBAC; zinc finger protein ZAT1-like
STRINGXP_009591198.16e-49(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-14C2H2-like zinc finger protein