PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06662g01007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 178aa    MW: 19972.1 Da    PI: 6.2412
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06662g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-051638123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              + C  C++ Fs++ +L  H+r+H
  Niben101Scf06662g01007.1 16 HYCRVCKRGFSSSGSLGGHMRSH 38
                              68********************9 PP
2zf-C2H2120.00065127149123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C+ C+k F+++  L  H  +H
  Niben101Scf06662g01007.1 127 FQCKACKKIFNSHQALGEHRASH 149
                               89*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.86E-91638No hitNo description
PROSITE profilePS501579.7231638IPR007087Zinc finger, C2H2
SMARTSM003550.0431638IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-41638IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-41638IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SuperFamilySSF576675.86E-9122149No hitNo description
PROSITE profilePS5015710.18127154IPR007087Zinc finger, C2H2
SMARTSM003550.04127149IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-7127151IPR007087Zinc finger, C2H2
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MVDNSEKNET ISSVLHYCRV CKRGFSSSGS LGGHMRSHGV GDTNETLTLS PVSSPESLVI  60
KRNIQLYNAK SKYYGYDKDQ YGSREEDGEE DEDLANCLVM LLNKSYDLSD NNKETKNKAK  120
EIEKGMFQCK ACKKIFNSHQ ALGEHRASHK KVKGCYAAKL DDNNNNTDID EDFISPTD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489071.17e-64PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1S4BJK91e-62A0A1S4BJK9_TOBAC; zinc finger protein ZAT1-like
STRINGXP_009591198.13e-63(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.14e-16C2H2-like zinc finger protein