PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06665g01018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 232aa    MW: 24904.5 Da    PI: 7.7337
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06665g01018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1315.7e-10104129126
                               XXXXCHHHCHHHHHHHHHHHHHHHHH CS
                    bZIP_1   1 ekelkrerrkqkNReAArrsRqRKka 26 
                               e+elkr+rrkq+NRe+ArrsR+RK+ 
  Niben101Scf06665g01018.1 104 ERELKRQRRKQSNRESARRSRLRKQV 129
                               89**********************96 PP
2bZIP_127.76.1e-091531912563
                               HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1  25 kaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               +ae++eL++++++L +eN++L+ e+++++ e+++l +++
  Niben101Scf06665g01018.1 153 QAECDELAQRAEVLREENSSLRAEVNRIRSEYEQLLAQN 191
                               89*********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165965.0E-18771No hitNo description
Gene3DG3DSA:1.20.5.1702.9E-1997190No hitNo description
SMARTSM003384.2E-15104193IPR004827Basic-leucine zipper domain
PfamPF001701.5E-7104130IPR004827Basic-leucine zipper domain
CDDcd147021.69E-16109184No hitNo description
PROSITE patternPS000360111126IPR004827Basic-leucine zipper domain
PfamPF001705.2E-7153191IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MMSATADTSQ NGNAAHGSQN GGTGGAPHSM VNQTMAIAPI SASAAGGIPG PTTNLNIGMD  60
YWGAATTPSI PAIHGNVPSA SVAGGLVAAG SRDSAQSHMW IQDERELKRQ RRKQSNRESA  120
RRSRLRKQVQ IILQFFPFSI IINPDSTSPF VSQAECDELA QRAEVLREEN SSLRAEVNRI  180
RSEYEQLLAQ NASLKERLGE VPGEDDPRTS RDDQLLGKKA QHSSQKESGQ GS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126RRSRLRK
2120127RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625983.11e-131PREDICTED: bZIP transcription factor 16
SwissprotQ501B23e-59BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A1S4AGH51e-130A0A1S4AGH5_TOBAC; bZIP transcription factor 16-like
STRINGXP_009625983.11e-131(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30652446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.16e-47basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]