PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06674g05010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 101aa MW: 11660.8 Da PI: 7.0932

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06674g05010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	9e-09	39	80	2	48
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAv 48 r +h+e E+rRR +iN++ + Lr l+P+ ++K + a+ L ++v Niben101Scf06674g05010.1 39 RSKHSETEQRRRIKINER-QALRNLIPET----DQKRDRASFLLETV 80 899*************.9******8....79999999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.3E-8	34	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-11	36	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.21E-6	39	81	No hit	No description
Pfam	PF00010	1.4E-6	39	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MVRTVKTHHE DDEEDDEEFS PDGSSQKGKS NDGKGNSLRS KHSETEQRRR IKINERQALR 60 NLIPETDQKR DRASFLLETV SGYDQLRVHS LHLVTSFTPR G

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801370.1	9e-36	PREDICTED: transcription factor BIM2-like
Refseq	XP_009801371.1	9e-36	PREDICTED: transcription factor BIM2-like
Refseq	XP_016484240.1	9e-36	PREDICTED: transcription factor BIM2-like
Refseq	XP_019239141.1	9e-36	PREDICTED: transcription factor BIM2-like
Refseq	XP_019239142.1	9e-36	PREDICTED: transcription factor BIM2-like
Swissprot	Q9LEZ3	9e-16	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A1J6JU41	2e-34	A0A1J6JU41_NICAT; Transcription factor bim2
TrEMBL	A0A1S4B5L5	2e-34	A0A1S4B5L5_TOBAC; transcription factor BIM2-like
TrEMBL	A0A1U7YHF0	2e-34	A0A1U7YHF0_NICSY; transcription factor BIM2-like
STRING	XP_009801370.1	3e-35	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8947	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.3	2e-18	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]