PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06757g00006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 1044aa MW: 118997 Da PI: 5.2006

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06757g00006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.9	3.1e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeelv +yLk+k++gkk+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyW Niben101Scf06757g00006.1 6 LPPGFRFHPTDEELVAYYLKRKINGKKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYW 89 79**************************.99***********6434555777*********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katgkd++v s + + vg+kktLv+y+grap+g +tdWvmheyrl Niben101Scf06757g00006.1 90 KATGKDRKVNS-QMRSVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 *******.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.89E-62	4	155	IPR003441	NAC domain
PROSITE profile	PS51005	61.079	6	156	IPR003441	NAC domain
Pfam	PF02365	1.1E-29	7	133	IPR003441	NAC domain
SuperFamily	SSF53807	9.81E-5	838	1002	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1044 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING KKIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QMRSVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDERECEV SNGLQDAYAL CRVIKRSLND PKTGDVHYGS DRSSSIEIYS 180 EGRCDHHDME IRSEDYAMPP SSSSSSMAAH GSPMTGVATP TLSDDKWMQY LSNEAFSFNN 240 STHPIPNYGT LPYPPSKVNI ALECARLQHS LTLPPLEIQD FPQVGYVDIK VPQSSFTQST 300 NQTDIVEEIL SVAQASQNLI NQDSSWGGNS CAPVDNFSFL PPNNNQIHDL DSFHFIEQLK 360 EDQNVRSIDI GDFCVLDFKS DRMVENLRWI GMSDRDLEKT FLEDYQTVPI ENISAVQREE 420 NQFQGEYSIH HNSLNGFNAT ETDNFSIGFG NDNLLDDGDM TDCLSNSPSF EIYEKIEVNH 480 GFYIATRQAA KTFYHQVTPS TTLRIHRNLV TVHDLPIYIG KRLDSTAVVP KERFDNLIKK 540 VTRSWTTTMR TLVGMVALLH TFLWICFGEC LDEKGSKLEA KRGVSVNREC LMERYEKKEA 600 QDYKWDYCYK QNKFPIADKE EAKYCNVAVE NKWRYLTLVV PIDSTVGLLD LCLQIFLVLL 660 WCIHTLEFLE LASAATPKVK VGNISKVEDA SYFRIYYGQT FKVIKNTLDG KSYLLIQNNT 720 RMASRTKYCT SRIKSFVIPL ANYSIETDYY FPGTILTTST FPLNKLYMFF LYLLGMLGNL 780 KGITSTYVTS QCVLKLYQDG QIESINKSEP QQLAQYAAHF IANTDETQPC NFATFVPIEW 840 IKYLGVFANL ENRANQVYDA IKENYLCLSK SATSKTSVKP TVSWMEYKDF VEDAGGVNVD 900 DSINRITYNM SIPDDLEEFH AILCTVDVVI DDTYTSDPAV YNASTFLGNI NLEDQSCFAF 960 LSNQSLWRYD KRVQNSTVLD WYDGAVSQPQ LVLADIIEAL YPTGNYNTTY FRNIAKGEGI 1020 ISIRPEMCER DGSIAVEPTV VACQ

Sequence ? help Back to Top

Protein Sequence Length: 1044 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKING KKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QMRSVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDERECEV SNGLQDAYAL CRVIKRSLND PKTGDVHYGS DRSSSIEIYS  180
EGRCDHHDME IRSEDYAMPP SSSSSSMAAH GSPMTGVATP TLSDDKWMQY LSNEAFSFNN  240
STHPIPNYGT LPYPPSKVNI ALECARLQHS LTLPPLEIQD FPQVGYVDIK VPQSSFTQST  300
NQTDIVEEIL SVAQASQNLI NQDSSWGGNS CAPVDNFSFL PPNNNQIHDL DSFHFIEQLK  360
EDQNVRSIDI GDFCVLDFKS DRMVENLRWI GMSDRDLEKT FLEDYQTVPI ENISAVQREE  420
NQFQGEYSIH HNSLNGFNAT ETDNFSIGFG NDNLLDDGDM TDCLSNSPSF EIYEKIEVNH  480
GFYIATRQAA KTFYHQVTPS TTLRIHRNLV TVHDLPIYIG KRLDSTAVVP KERFDNLIKK  540
VTRSWTTTMR TLVGMVALLH TFLWICFGEC LDEKGSKLEA KRGVSVNREC LMERYEKKEA  600
QDYKWDYCYK QNKFPIADKE EAKYCNVAVE NKWRYLTLVV PIDSTVGLLD LCLQIFLVLL  660
WCIHTLEFLE LASAATPKVK VGNISKVEDA SYFRIYYGQT FKVIKNTLDG KSYLLIQNNT  720
RMASRTKYCT SRIKSFVIPL ANYSIETDYY FPGTILTTST FPLNKLYMFF LYLLGMLGNL  780
KGITSTYVTS QCVLKLYQDG QIESINKSEP QQLAQYAAHF IANTDETQPC NFATFVPIEW  840
IKYLGVFANL ENRANQVYDA IKENYLCLSK SATSKTSVKP TVSWMEYKDF VEDAGGVNVD  900
DSINRITYNM SIPDDLEEFH AILCTVDVVI DDTYTSDPAV YNASTFLGNI NLEDQSCFAF  960
LSNQSLWRYD KRVQNSTVLD WYDGAVSQPQ LVLADIIEAL YPTGNYNTTY FRNIAKGEGI  1020
ISIRPEMCER DGSIAVEPTV VACQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-55	2	133	11	140	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019265207.1	0.0	PREDICTED: NAC domain-containing protein 86-like
TrEMBL	A0A314L481	0.0	A0A314L481_NICAT; Nac domain-containing protein 45
STRING	Solyc02g081270.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1495	23	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-141	NAC domain containing protein 28