PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06769g01010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 505aa    MW: 56972.2 Da    PI: 4.6217
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06769g01010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.71.2e-30721772102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.....XTTSEEE CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.....kekiweF 81 
                               Fl+k++++++d++l+ +isw ++g+sfvv+d+ ef++ +Lpk Fkh+nf+SFvRQLn+Y    + ++++  ++     + + weF
  Niben101Scf06769g01010.1  72 FLSKTFDLVDDSSLDFIISWGSKGESFVVWDPVEFSRMILPKNFKHNNFSSFVRQLNTYVGITLAQSQEYLAHgfrkvDADRWEF 156
                               9**********************************************************666666666554545655449***** PP

                               EESXXXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  82 khksFkkgkkellekikrkks 102
                               +++ F +gk++ll++i+r++s
  Niben101Scf06769g01010.1 157 ANEGFLRGKRHLLKNIQRRRS 177
                               ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.75E-3167175IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.8E-4968175IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.9E-3368175IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.1E-2772175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-127295IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-12110122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-12123135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MNPFDKNPIS QPPGSESDTL PPHSITMDPE FAVFSEAPSS HFINLESFSA GEEGLGVVQP  60
MECLHGTQIP PFLSKTFDLV DDSSLDFIIS WGSKGESFVV WDPVEFSRMI LPKNFKHNNF  120
SSFVRQLNTY VGITLAQSQE YLAHGFRKVD ADRWEFANEG FLRGKRHLLK NIQRRRSPQS  180
HQARSSSAEA GKGTMDEIEK LRKEKSSMMQ EVVELQQQQR GTVQQMEAVN EKLQAAELRQ  240
KQMVSFLAKV FQNPAFLARL RQMKEQEKIT SPRTLRKFVK HQPHDQDRPE SSIEGQIVKY  300
KPDFQDLVTS FENPDFNPVV DQLLPETGFG AEAMLFKDQE RVIEGASNFN PEDSYFEGKN  360
VASPQLEVMP ECFVSFPEEL AKEKNILGFS SPGIGSMVKE EEVWSMGFEA SAGMSSTGTE  420
LWGSLSNYDV PDFGVSAGLP DVLWAIDPLQ EAGSSGVDKW PNDEFAALEA LLRILDRMTL  480
LAQDFLIKVW GPYGDFYGYD CLMNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-206717524129Heat shock factor protein 1
5d5v_B6e-206717524129Heat shock factor protein 1
5d5v_D6e-206717524129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765951.10.0PREDICTED: heat stress transcription factor A-3
RefseqXP_009765952.10.0PREDICTED: heat stress transcription factor A-3
RefseqXP_009765953.10.0PREDICTED: heat stress transcription factor A-3
RefseqXP_009765954.10.0PREDICTED: heat stress transcription factor A-3
RefseqXP_009765955.10.0PREDICTED: heat stress transcription factor A-3
RefseqXP_016498724.10.0PREDICTED: heat stress transcription factor A-3-like
TrEMBLA0A1S4CCN00.0A0A1S4CCN0_TOBAC; heat stress transcription factor A-3-like
TrEMBLA0A1U7VVI40.0A0A1U7VVI4_NICSY; heat stress transcription factor A-3
STRINGXP_009765951.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87272025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.17e-97heat shock transcription factor A3