PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06778g04005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 221aa MW: 25091.2 Da PI: 4.6077

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06778g04005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.7e-06	147	168	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+ff++ C++G++C+ +Hg Niben101Scf06778g04005.1 147 VMCKFFLQ-QRCRFGSSCRLSHG 168 68****.*******97776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15	143	170	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.0E-4	143	169	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.49E-5	144	168	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.8E-4	148	169	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MAEEEEERAV LERELELQLE EQREALHSLA QALSSDPSNP ELLEVHEELV QSIKDAEEGL 60 LHLKRARLLL EVDAIHCPKK EPADVEVEPL DPTEVKTEPL VDEEYSVGSK CRFRNTDGRW 120 YNGLVVGLEG SRSAKICFLN PTSENMVMCK FFLQQRCRFG SSCRLSHGIN IPISSLKKYI 180 PMKWDPSLAG SSIWALSDSK VGLWKEAELE SWDEKLNLGH X

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788527.1	1e-144	PREDICTED: zinc finger CCCH domain-containing protein 18
Swissprot	Q6K687	3e-89	C3H18_ORYSJ; Zinc finger CCCH domain-containing protein 18
TrEMBL	A0A1U7X8U4	1e-143	A0A1U7X8U4_NICSY; zinc finger CCCH domain-containing protein 18
STRING	XP_009788527.1	1e-144	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24830.1	1e-68	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]