PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06836g01010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 247aa    MW: 28080.6 Da    PI: 5.7639
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06836g01010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-122331245
                              HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                              lv+++kq G++ W+ Ia++++ gRt++ +k++w+
  Niben101Scf06836g01010.1  2 LVEGHKQIGNK-WAEIAKRIP-GRTENAIKNHWN 33
                              89*********.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.402140IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-12134IPR009057Homeodomain-like
SMARTSM007170.0012138IPR001005SANT/Myb domain
CDDcd001672.59E-8136No hitNo description
SuperFamilySSF466891.56E-9243IPR009057Homeodomain-like
PfamPF002494.4E-10233IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MLVEGHKQIG NKWAEIAKRI PGRTENAIKN HWNATKRRQN SRRNKLKKQE KDGPNESKYR  60
SNILQDYIRS KYFSDDSRLT TTMTPMTNAT PPYSDDDSPS LLTSQTYDEE MNFMQNLFGR  120
NSLMENSGKV LDNNSSSSSY GFNSFGFNYS NNDNQTDNGQ DGSNLYLEPN MYMADDQSYH  180
CSDLYLSYLL DRTSTSAATS LPYSGSFRYG NMINQASSSS GGNNEVDLME MVSSSFYPQK  240
TSNNTFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619843.11e-143PREDICTED: transcription factor MYB108-like
RefseqXP_009767834.11e-144PREDICTED: transcription factor MYB108-like
TrEMBLA0A1J6IRQ31e-163A0A1J6IRQ3_NICAT; Transcription factor myb98
STRINGXP_009767834.11e-143(Nicotiana sylvestris)
STRINGXP_009619843.11e-143(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-29myb domain protein 119