PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06846g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 202aa    MW: 23258.2 Da    PI: 9.3658
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06846g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM774.4e-2471321127
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lp+GfrFhPtd el+ ++Lk+ v++  l+ +  ++ ++i ++ePw++  + +++ek  yf sk +k +++ k+ +r++ +g+Wk+
  Niben101Scf06846g01004.1   7 LPMGFRFHPTDAELI-DFLKRYVHRGILPPSGDVEVAKIGDTEPWQIFGHSNSKEKTRYFVSKLKKFKNSTKKFSRTVGQGTWKS 90 
                               799************.9**********9997889999**********87777788899*9999999999999************* PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                               + +  ++ ++ k+   g +++L +   +  k ++ +W+m+ey+
  Niben101Scf06846g01004.1  91 QSSGAPIEHEsKNIIAGFRRSLKYK-SNIVKEQSDKWLMKEYT 132
                               *******998455569*******98.55666689********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-234138IPR003441NAC domain
PROSITE profilePS5100522.0457167IPR003441NAC domain
PfamPF023652.3E-168132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MLPKAKLPMG FRFHPTDAEL IDFLKRYVHR GILPPSGDVE VAKIGDTEPW QIFGHSNSKE  60
KTRYFVSKLK KFKNSTKKFS RTVGQGTWKS QSSGAPIEHE SKNIIAGFRR SLKYKSNIVK  120
EQSDKWLMKE YTNEANTTLT TSTFENQGFE AYGQGQTNYL AAGVEQNIDY QYADYSNDWF  180
LSMINFEELP EQDIDMQIAK TK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263626.13e-87PREDICTED: NAC domain-containing protein 68-like
TrEMBLA0A1S3X9T11e-80A0A1S3X9T1_TOBAC; NAC domain-containing protein 41-like
TrEMBLA0A1U7V8K21e-80A0A1U7V8K2_NICSY; NAC domain-containing protein 2-like
STRINGXP_009761286.12e-81(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1523178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-11NAC-domain protein 101