PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06848g08006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 194aa    MW: 21963.7 Da    PI: 5.346
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06848g08006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-191362356
                       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              y+GVr +k +g+Wv+eIr+p   gk++r++lg++ t+e+Aa+a++ a+  l+ge
  Niben101Scf06848g08006.1 13 YRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYETPEMAAAAYDVAAFHLKGE 62
                              9****999.**********8...557***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.1E-321270IPR001471AP2/ERF domain
PROSITE profilePS5103223.091269IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-221270IPR016177DNA-binding domain
SMARTSM003808.0E-361275IPR001471AP2/ERF domain
CDDcd000181.31E-221371No hitNo description
PRINTSPR003671.1E-121324IPR001471AP2/ERF domain
PfamPF008472.3E-121362IPR001471AP2/ERF domain
PRINTSPR003671.1E-125171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEDHQQSSNI HTYRGVRKRK WGKWVSEIRE PGKKTRIWLG SYETPEMAAA AYDVAAFHLK  60
GERARLNFPE LIDSFPKPSS SKPEDVQMAA HEAAMRFKRQ TPEPPESGGC GGGGTVVPVR  120
VGLSSSQIQA INESPLDSPK MWMELAGALL LRDPVREYTY PSYSFTDPMV LCEDIAEFGE  180
WDEMQQNHDS IWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-181374668ATERF1
3gcc_A1e-181374668ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016502765.11e-113PREDICTED: ethylene-responsive transcription factor ERF022-like
TrEMBLA0A1S4CNX51e-112A0A1S4CNX5_TOBAC; ethylene-responsive transcription factor ERF022-like
STRINGXP_009783971.11e-111(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-48ERF family protein