PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06850g00011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 230aa MW: 26814.7 Da PI: 8.6333

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06850g00011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46	9.6e-15	80	129	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah +Er+RR+++ + ++ Lr++lP + ++K s ++ Le+Av+YI++L+ Niben101Scf06850g00011.1 80 AHRDIERQRRQEMANLYASLRSHLPLEF--LKGKRSASDHLEQAVNYIQHLE 129 8***********************65..9*****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.855	76	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-13	79	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.11E-9	80	132	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.7E-11	80	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.2E-12	80	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-5	82	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MDPLSEIFSF HKIQDYDLYH QEIQIPSTPF QLPQQDLVKI GTNSLARNDT NKKKRLLSSV 60 STESTSNEIM DQNKLIKIIA HRDIERQRRQ EMANLYASLR SHLPLEFLKG KRSASDHLEQ 120 AVNYIQHLEN NITDLEKKRD KLKFLADYSS LEDKVRIHKY NLEEDVRVNP CQDGVEILIK 180 KKFGKEGLPL SKVVEELMKR KLNVVTCVST KVDETSLHKI QVEVYTHTMQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016437313.1	1e-142	PREDICTED: transcription factor bHLH118-like
TrEMBL	A0A1S3XC32	1e-140	A0A1S3XC32_TOBAC; transcription factor bHLH118-like
STRING	XP_009597785.1	1e-137	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	3e-35	bHLH family protein