PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06862g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 445aa    MW: 50499.4 Da    PI: 7.2228
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06862g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.21e-46462012128
                       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..............................kvkaeek 56 
                               +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp                                ++ +ek
  Niben101Scf06862g00001.1  46 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPGvgilepvrelcqrtnpivsfitwfallvlaLAAIGEK 129
                               79***************************.89***************5589***************9999999988864445999 PP

                       NAM  57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               ewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ + +glkktLvfy+g+apkg +t+W+m+eyrl
  Niben101Scf06862g00001.1 130 EWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSENLRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 201
                               **********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-484593IPR003441NAC domain
PROSITE profilePS5100551.82545222IPR003441NAC domain
PfamPF023651.3E-2447201IPR003441NAC domain
SuperFamilySSF1019411.07E-48122221IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MAIVPFTSII MSQSQQHEQQ DATINNINNT IKDDDDDDDH EHDMVMPGFR FHPTEEELVE  60
FYLRRKVEGK RFNVELITFL DLYRYDPWEL PGVGILEPVR ELCQRTNPIV SFITWFALLV  120
LALAAIGEKE WYFYVPRDRK YRNGDRPNRV TTSGYWKATG ADRMIRSENL RSIGLKKTLV  180
FYSGKAPKGI RTSWIMNEYR LPQHETERLQ KAEISLCRVH KRTGVEDHPS LPRSLPTTRA  240
SSSSSSRGPT NSIKKQHHQQ VVQNSFISPY VVGQSSQQQI DEKLSTETSA SSTSTDHHHH  300
HHVATSLGLN SLSNSYNSVA LDPMARGTAT SALLTTSSSL SPFASFVSQN STGAVVHDLH  360
TLINLDQQVV FHNQNFHNNP INQIPAVASQ QFLQPQVLPQ HAQPQSLLFQ GSLQSSSSFS  420
DRLWEWSSIQ TDANCKDYQP NNPFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-494722219165NO APICAL MERISTEM PROTEIN
1ut4_B5e-494722219165NO APICAL MERISTEM PROTEIN
1ut7_A5e-494722219165NO APICAL MERISTEM PROTEIN
1ut7_B5e-494722219165NO APICAL MERISTEM PROTEIN
4dul_A5e-494722219165NAC domain-containing protein 19
4dul_B5e-494722219165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626107.10.0PREDICTED: NAC domain-containing protein 35-like isoform X1
TrEMBLA0A1S4BSX50.0A0A1S4BSX5_TOBAC; transcription factor JUNGBRUNNEN 1-like isoform X1
STRINGXP_009626107.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38882446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-102NAC domain containing protein 35