PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06872g01004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 352aa MW: 39607.3 Da PI: 5.8853

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06872g01004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47	4.6e-15	167	214	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h Er+RR+r+ ++f L +l+P++ kKl+Ka+iL A++YIk+L+ Niben101Scf06872g01004.1 167 QDHVLSERKRRERLTQCFISLSTLIPNL-----KKLDKASILGDAIKYIKQLE 214 568899********************.....9***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.196	164	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-18	168	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.3E-13	168	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.83E-15	169	218	No hit	No description
SuperFamily	SSF47459	4.45E-18	169	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.9E-17	170	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MDMSSATWWS EMEIMNMDDL HYIENCQTMT SSFDELPLNN NYPFSPCTYD IQAAGILEEK 60 PAFCSSRMGT DHQNTYFSSP SSSSSSPSVI SFCNTNSPST HNYQENYLNS SVKTEVPSGP 120 TSIHFSSQTS PDSDFDDSQH LFQALGFGAG DIKQKKSTYS RTPFQAQDHV LSERKRRERL 180 TQCFISLSTL IPNLKKLDKA SILGDAIKYI KQLENQVKSL EEETKKFSEE PVVAVKRSRL 240 LSTYDNSSSS DENSNNSSTN KSVPEVEVRA ADGNVLIRIY CKKQARIIKE IFSQVEKFNL 300 TIISSSVMPF GDISTYITIV AKMDHQLNMT AEYAAKRIRE AIVKLISSHF DV

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MDMSSATWWS EMEIMNMDDL HYIENCQTMT SSFDELPLNN NYPFSPCTYD IQAAGILEEK  60
PAFCSSRMGT DHQNTYFSSP SSSSSSPSVI SFCNTNSPST HNYQENYLNS SVKTEVPSGP  120
TSIHFSSQTS PDSDFDDSQH LFQALGFGAG DIKQKKSTYS RTPFQAQDHV LSERKRRERL  180
TQCFISLSTL IPNLKKLDKA SILGDAIKYI KQLENQVKSL EEETKKFSEE PVVAVKRSRL  240
LSTYDNSSSS DENSNNSSTN KSVPEVEVRA ADGNVLIRIY CKKQARIIKE IFSQVEKFNL  300
TIISSSVMPF GDISTYITIV AKMDHQLNMT AEYAAKRIRE AIVKLISSHF DV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	177	ERKRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009771547.1	0.0	PREDICTED: transcription factor bHLH18-like
TrEMBL	A0A1U7VUL2	0.0	A0A1U7VUL2_NICSY; transcription factor bHLH18-like
STRING	XP_009771547.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4508	14	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-41	bHLH family protein