PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06872g02002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 315aa    MW: 35525.9 Da    PI: 7.1787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06872g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-14130177355
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               + h  +Er+RR+r+ ++f  L +l+P++     kKl+Ka++L  A++YIk+L+
  Niben101Scf06872g02002.1 130 QDHVLAERKRRERLTQRFIALSTLIPNL-----KKLDKASVLGDAIKYIKQLE 177
                               56999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.177127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-12130177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-17131192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.69E-14132181No hitNo description
SuperFamilySSF474593.01E-17132193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-16133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDMSSSTWWS EMERSTNMND HSFINNNLSQ MMTPFNELPF NKPFSSCNYG YSSCPSANTT  60
TVATNHFENL NYTSVKTELT SGTTLNFSSS VSTDSDYFHD RQNLIQALGF GAADTTTQKK  120
SYNKTSLQAQ DHVLAERKRR ERLTQRFIAL STLIPNLKKL DKASVLGDAI KYIKQLEEQV  180
KTLEEKAKNC SEESVVAVKR ARVLSSYDDY SSSSDENSSI STDRSFPDIE VRVSDGNFMI  240
SIYCKKQTGI IKEIFNQVEK LHLSIISSSV MPFGYNTTHT TIIAQMGYKL SMTPNHVANR  300
IRAVMMKEED TTLTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13131193873Transcription factor MYC2
5gnj_B2e-13131193873Transcription factor MYC2
5gnj_E2e-13131193873Transcription factor MYC2
5gnj_F2e-13131193873Transcription factor MYC2
5gnj_G2e-13131193873Transcription factor MYC2
5gnj_I2e-13131193873Transcription factor MYC2
5gnj_M2e-13131193873Transcription factor MYC2
5gnj_N2e-13131193873Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140ERKRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594425.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S4D2J20.0A0A1S4D2J2_TOBAC; transcription factor bHLH18-like
STRINGXP_009594425.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-44bHLH family protein