PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06886g01011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 90aa    MW: 10215.6 Da    PI: 5.8651
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06886g01011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.3e-0621571854
                              HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                       HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                              +  ++L++llP+ +   +s K s + +L+++++YI+sL
  Niben101Scf06886g01011.1 21 ELVSKLQQLLPEiR-TRHSIKASASKVLQETCNYIRSL 57
                              56689*******87.567777***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.455357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-7475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-71772IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MSSRRSRDSE SSRISDDQII ELVSKLQQLL PEIRTRHSIK ASASKVLQET CNYIRSLNRE  60
MDDLSDRLSQ LLSTLDADSP EAAIIRSLII
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016559055.14e-45PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX13e-36PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1U8FK008e-44A0A1U8FK00_CAPAN; Transcription factor PRE5
TrEMBLA0A2G2XD168e-44A0A2G2XD16_CAPBA; Transcription factor PRE5
TrEMBLA0A2G3A6458e-44A0A2G3A645_CAPAN; transcription factor PRE6-like
STRINGXP_009758713.11e-43(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.13e-21bHLH family protein