PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06909g04006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 324aa    MW: 36842.7 Da    PI: 6.007
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06909g04006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.37.4e-24116177159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                               +dDg++WrKYGqK++  s++pr+Y+rCt++   +C+++k+v++ +++p ++ +tY g+H+++
  Niben101Scf06909g04006.1 116 VDDGHAWRKYGQKQILHSTYPRHYFRCTHKydkKCQATKQVQKIQDNPPLFRTTYYGNHTCK 177
                               59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-25101177IPR003657WRKY domain
PROSITE profilePS5081119.497111174IPR003657WRKY domain
SuperFamilySSF1182901.83E-23113178IPR003657WRKY domain
SMARTSM007741.1E-34116178IPR003657WRKY domain
PfamPF031066.8E-23117177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MESPLPEKSS ADLKRAIDGL IRGQELTRRL KEIIKEPLGG EVATIMAENL IGKIMNSFSE  60
TLSVINSGES DEDTAEVKSS EDSSGSCKST SFKDRRGLYK RRKTSETNTK ESSDLVDDGH  120
AWRKYGQKQI LHSTYPRHYF RCTHKYDKKC QATKQVQKIQ DNPPLFRTTY YGNHTCKPFP  180
RVSQIILDTP IHADSSILLC FDHNNNNNYS SVQNANHNYQ PYDIPTFPSI KQETKEEVFQ  240
RSCTYYPKIE YQNQSSNSDY FLQANDVHLS TPAVFEASGD HMAAALSPDV ISSGVYSSRT  300
TSTDNLEIDF DFEESLWNFE GYNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-22116177869OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597703.10.0PREDICTED: probable WRKY transcription factor 70
RefseqXP_016436463.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1S3X9M40.0A0A1S3X9M4_TOBAC; probable WRKY transcription factor 70
STRINGXP_009597703.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-37WRKY DNA-binding protein 70