PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06951g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 159aa    MW: 18396.4 Da    PI: 11.7425
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06951g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.6e-194292255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr+++ +g+++AeIrdp +ng  +r++lg++  ae+Aa a+++a+ +++g
  Niben101Scf06951g00004.1 42 RYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYEMAEDAALAYDKAAYRIRG 92
                              6********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-3142100IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2242102IPR016177DNA-binding domain
CDDcd000186.36E-2842100No hitNo description
PfamPF008473.9E-134292IPR001471AP2/ERF domain
PROSITE profilePS5103223.76242100IPR001471AP2/ERF domain
SMARTSM003801.7E-3642106IPR001471AP2/ERF domain
PRINTSPR003672.3E-134354IPR001471AP2/ERF domain
PRINTSPR003672.3E-1382102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MPLTSRHNLP SKQNLKLALV RRECIISPHL RLRRRQRKKT ERYRGVRQRP WGKFAAEIRD  60
PAKNGARVWL GTYEMAEDAA LAYDKAAYRI RGSRALLNFP LRVNSGEPEP VRVGSKRSSI  120
LPESSSSSSS ENVSTKRTKK KFVLLRRIEE FVQCIKFFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-4039107270ATERF1
3gcc_A8e-4039107270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761318.18e-52PREDICTED: ethylene-responsive transcription factor 2-like
RefseqXP_016475770.18e-52PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ404793e-45ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A1S4AGD92e-50A0A1S4AGD9_TOBAC; ethylene-responsive transcription factor 2-like
TrEMBLA0A1U7V4K22e-50A0A1U7V4K2_NICSY; ethylene-responsive transcription factor 2-like
STRINGXP_009761318.13e-51(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.17e-32ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]