PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06984g02002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 326aa    MW: 35503 Da    PI: 8.5578
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06984g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-1760109255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  Niben101Scf06984g02002.1  60 RYRGVRQRS-WGKWVAEIREPRK---RTRRWLGTFATAEDAARAYDRAAIILYG 109
                               59****999.**********954...5999*******************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.33960117IPR001471AP2/ERF domain
CDDcd000182.86E-2160119No hitNo description
SuperFamilySSF541719.81E-2160118IPR016177DNA-binding domain
PfamPF008472.3E-1160105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2960117IPR001471AP2/ERF domain
SMARTSM003804.1E-3860123IPR001471AP2/ERF domain
PRINTSPR003673.1E-106172IPR001471AP2/ERF domain
PRINTSPR003673.1E-108399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSTSPKAQHL IPSQTVPITS EEKTTTISSA TVSDTTSTST SSNSNKKGKG KGGPDNNKFR  60
YRGVRQRSWG KWVAEIREPR KRTRRWLGTF ATAEDAARAY DRAAIILYGS RAQLNLQPST  120
VNNSSSSSQS SKKSSSSFST QTLRPLLPRP SGFAFTSFSS PNTAPPVSNS VGAGCGYVPY  180
GFFPAVKYSQ ELVQPHQQQQ QYAICDGYGP EADNLAHEAG TTCSYSSPSP NPSHIQEKPP  240
KQEDQSSHHE YQNQQQNTLF GETINPFVGS SMSFCSTQTI AAPVVSDPVA VMGGPGSPVF  300
WPTNDDGNYP AVNFWDYSYD SFMFDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1861116359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480146.11e-172PREDICTED: ethylene-responsive transcription factor ABI4
TrEMBLA0A314L7U61e-173A0A314L7U6_NICAT; Ethylene-responsive transcription factor abi4
STRINGXP_009776130.11e-171(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.11e-28ERF family protein