PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06987g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 111aa MW: 12599.7 Da PI: 9.7817

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06987g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.7	4.6e-12	14	74	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.............TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.............kgRtlkqcksrwqkyl 48 +g+WT+eEd ll +++++ G g+W++ + g + R++++c++r+ +yl Niben101Scf06987g00001.1 14 KGAWTAEEDMLLTNYIQLNGEGNWRSLPINAGntsfsiysviiieLLRCGESCRLRLMNYL 74 79*********************************************************97 PP
2	Myb_DNA-binding	26	2.1e-08	80	110	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 r +++ eEd+l+++++ +lGg+ W++Ia +++ Niben101Scf06987g00001.1 80 RRNFSREEDDLIIRLHSLLGGR-WSLIAGRLQ 110 679*****************.***9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.7E-16	5	77	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.258	9	74	IPR017877	Myb-like domain
SMART	SM00717	7.2E-7	13	76	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-10	14	74	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.05E-18	15	105	IPR009057	Homeodomain-like
CDD	cd00167	1.89E-6	16	74	No hit	No description
PROSITE profile	PS51294	17.352	75	111	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.8E-13	78	111	IPR009057	Homeodomain-like
SMART	SM00717	9.3	79	110	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-6	80	110	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MGRAPCCSKV GMRKGAWTAE EDMLLTNYIQ LNGEGNWRSL PINAGNTSFS IYSVIIIELL 60 RCGESCRLRL MNYLRPGIKR RNFSREEDDL IIRLHSLLGG RWSLIAGRLQ G

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:18541146, ECO:0000269\|PubMed:9839469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802421.1	1e-57	PREDICTED: transcription repressor MYB6-like
Swissprot	Q9S9K9	2e-41	MYB3_ARATH; Transcription factor MYB3
TrEMBL	A0A1U7YKB0	3e-56	A0A1U7YKB0_NICSY; transcription repressor MYB6-like
STRING	XP_009802421.1	5e-57	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15484	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	8e-44	myb domain protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Wada T,Hayashi N,Tominaga-Wada R Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1089372 [PMID:26339713] Wada T,Tominaga-Wada R CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression. Plant Sci., 2015. 241: p. 260-5 [PMID:26706076] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]