PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06999g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 220aa    MW: 25851.8 Da    PI: 6.2491
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06999g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-151663148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W +eEde+l   v+ lG ++W++ a+  g++R++k+c++rw +yl
  Niben101Scf06999g01003.1 16 KGPWFEEEDERLTYIVAILGERRWDALAKASGLRRSGKSCRLRWMNYL 63
                              79********************************************97 PP
2Myb_DNA-binding52.89.2e-1772114448
                               S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                T++E+ l+v++ kq+G++ W++Ia+ ++ gRt++++k++w+++l
  Niben101Scf06999g01003.1  72 ITEDEERLIVQLQKQFGNK-WSKIAKQLP-GRTDNEIKNYWRSHL 114
                               59*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3231163IPR017930Myb domain
SuperFamilySSF466891.11E-2714110IPR009057Homeodomain-like
SMARTSM007171.6E-111565IPR001005SANT/Myb domain
PfamPF002491.5E-121663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-201770IPR009057Homeodomain-like
CDDcd001679.68E-81863No hitNo description
PROSITE profilePS5129426.95564118IPR017930Myb domain
SMARTSM007176.9E-1668116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2471117IPR009057Homeodomain-like
PfamPF002491.0E-1472114IPR001005SANT/Myb domain
CDDcd001671.22E-1173114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAFQLQLTMQ EEKLRKGPWF EEEDERLTYI VAILGERRWD ALAKASGLRR SGKSCRLRWM  60
NYLRPNLKHG HITEDEERLI VQLQKQFGNK WSKIAKQLPG RTDNEIKNYW RSHLRKKALI  120
YEQGSNTSTN SELKSSFGKD DCSSADSLTE MEVSNYSIDH SSNETRLSDW IPSWTYEQSQ  180
MEHHMYLCTL NICSCYPQCF SEDNNNSIST WDDTSSSIWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-29141182105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-281411856159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-281411856159MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-29141182105C-Myb DNA-Binding Domain
1msf_C6e-29141182105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235520.11e-148PREDICTED: transcription factor MYB57-like
SwissprotQ9SCP11e-53MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A1S4AKD81e-146A0A1S4AKD8_TOBAC; transcription factor MYB48-like
STRINGXP_009625011.11e-155(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.12e-55myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]