PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07000g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 282aa MW: 31933.8 Da PI: 7.739

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07000g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	202	224	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ Niben101Scf07000g00002.1 202 FMCRKCGKPFAVKGDWRTHEKNC 224 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.19E-6	183	222	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.0E-5	198	222	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MTEPYYNFFT GWFNFLPIHQ QYLSSPNFCY NNSNNNNFQE EEVSLAPPPS PPLKEALPLL 60 KNVDKLDKTN TTKYSYESTS SMGEEDNNSN ENVSVSLHIG LPISPSSDFT SSRVSFSPEG 120 LVIDKSVGGN REFDMHMWGH GSQYRKGPES LRGTQPSAML RLPCYCCAPD CKHNIDHPRA 180 RTLKDFRTLQ THYKRKHGVK PFMCRKCGKP FAVKGDWRTH EKNCGKIWYC ICGSDFKHKR 240 SLKDHIKSFG RGHGAVGIPN IEELEDESTS EIEQDVGSSS PV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009763748.1	0.0	PREDICTED: protein TRANSPARENT TESTA 1-like
Refseq	XP_016447718.1	0.0	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	6e-86	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1S3Y630	0.0	A0A1S3Y630_TOBAC; zinc finger protein WIP2-like
TrEMBL	A0A1U7VBK9	0.0	A0A1U7VBK9_NICSY; protein TRANSPARENT TESTA 1-like
STRING	XP_009763748.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-81	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]