PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07004g02016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 139aa    MW: 15712.1 Da    PI: 8.4753
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07004g02016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.41.5e-1949133496
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                ++ps+v+   +l lp +f++++   ++++ t+tl de+g++W   +  +k++    l++GWk+F+ +++L +gD +vF+l++ +
  Niben101Scf07004g02016.1  49 SMLPSHVSGGFWLGLPSNFCRKNL--PRRDDTITLIDETGEEWPTVYLAQKNG----LSGGWKKFAVDHDLADGDAIVFHLIRPT 127
                               689*****************9995..346679***************555555....9************************978 PP

                               EE..EEEE CS
                        B3  89 efelvvkv 96 
                               +f  +v++
  Niben101Scf07004g02016.1 128 KF--KVTI 133
                               88..6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-2539136IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-2240135IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-2744135No hitNo description
PROSITE profilePS5086313.78946137IPR003340B3 DNA binding domain
SMARTSM010198.1E-2446137IPR003340B3 DNA binding domain
PfamPF023622.4E-1749133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MIPRRMSTPR KRDLSNMVYA TDEERAASIE KAEKLEASLG PDYPILIRSM LPSHVSGGFW  60
LGLPSNFCRK NLPRRDDTIT LIDETGEEWP TVYLAQKNGL SGGWKKFAVD HDLADGDAIV  120
FHLIRPTKFK VTILNIKDV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783454.17e-96PREDICTED: B3 domain-containing protein At5g42700-like
RefseqXP_016434462.17e-96PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ69V364e-52Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A1S3X3J52e-94A0A1S3X3J5_TOBAC; B3 domain-containing protein At5g42700-like
TrEMBLA0A1U7X9502e-94A0A1U7X950_NICSY; B3 domain-containing protein At5g42700-like
STRINGXP_009783454.13e-95(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-51B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]