PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07030g08005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 60aa    MW: 6871.9 Da    PI: 10.0204
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07030g08005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.92.4e-055351851
                              HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS
                       HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYI 51
                              s +++Lr+++P++   +  K sK + Le  ++ +
  Niben101Scf07030g08005.1  5 SNINQLRKHVPTS---SRSKKSKHDHLEGMIDML 35
                              5699********9...9999*******9888876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
MDNMSNINQL RKHVPTSSRS KKSKHDHLEG MIDMLRGGMN NFANAINRLS TILYILESEI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019260030.13e-19PREDICTED: mitogen-activated protein kinase mpkC-like
TrEMBLA0A1J6KCV47e-19A0A1J6KCV4_NICAT; Uncharacterized protein (Fragment)
TrEMBLA0A1J6KNF41e-17A0A1J6KNF4_NICAT; Uncharacterized protein