PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07034g01002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 348aa MW: 37461.3 Da PI: 6.6621

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07034g01002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	224.1	2.8e-69	115	273	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel........k 79 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql++++++++++++++++ r+ + + Niben101Scf07034g01002.1 115 GGGISCQDCGNQAKKDCEHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTTLQQQQEEQKQQQQQTRQLQIdnnpkrqrE 199 5789**************************************************99998887744444443333333333223 PP DUF702 80 skkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++s+l +t++ + s++ le+ ++P++vss+avf+cvr+ssvdd+e+++aYqtav+igGhvfkGiLydqG+e+ Niben101Scf07034g01002.1 200 DPSSSSLVCTRILPS-STSGLEVGNFPSKVSSTAVFHCVRMSSVDDAEDQFAYQTAVNIGGHVFKGILYDQGPEN 273 345566666776555.455899999**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.6E-67	117	272	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.8E-27	119	161	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.8E-27	224	271	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MAGFFSLGGG AASSSQAQDQ QHQQNTNNPP TEISPESWFL YRNDQELPTY RGFELWQTSN 60 SQPQIRHPVN PLQDLYPTAA VGLGVGPSLS DFTMTAARPD HDPSSGGLVM MRSGGGGISC 120 QDCGNQAKKD CEHMRCRTCC KSRGFQCQTH VKSTWVPAAK RRERQQQLTT LQQQQEEQKQ 180 QQQQTRQLQI DNNPKRQRED PSSSSLVCTR ILPSSTSGLE VGNFPSKVSS TAVFHCVRMS 240 SVDDAEDQFA YQTAVNIGGH VFKGILYDQG PENHYMAAGE SSSAGGSASD HHNLIGAAGT 300 ATSAATTSAS GGGVAAAPEA SPYLDPSLYP APINTFMAGT QFFPPPRS

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MAGFFSLGGG AASSSQAQDQ QHQQNTNNPP TEISPESWFL YRNDQELPTY RGFELWQTSN  60
SQPQIRHPVN PLQDLYPTAA VGLGVGPSLS DFTMTAARPD HDPSSGGLVM MRSGGGGISC  120
QDCGNQAKKD CEHMRCRTCC KSRGFQCQTH VKSTWVPAAK RRERQQQLTT LQQQQEEQKQ  180
QQQQTRQLQI DNNPKRQRED PSSSSLVCTR ILPSSTSGLE VGNFPSKVSS TAVFHCVRMS  240
SVDDAEDQFA YQTAVNIGGH VFKGILYDQG PENHYMAAGE SSSAGGSASD HHNLIGAAGT  300
ATSAATTSAS GGGVAAAPEA SPYLDPSLYP APINTFMAGT QFFPPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009763993.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Refseq	XP_016436970.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	1e-126	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1S3XAL2	0.0	A0A1S3XAL2_TOBAC; protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A1U7VCB3	0.0	A0A1U7VCB3_NICSY; protein SHI RELATED SEQUENCE 1-like
STRING	XP_009763993.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-71	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]