PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07034g05008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 109aa MW: 12595.5 Da PI: 10.4615

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07034g05008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84	9.4e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrngi+KKA+EL vLCda+++++++sst k++ey s Niben101Scf07034g05008.1 9 KKIENSTNRQVTYSKRRNGIIKKAKELTVLCDAKISLLMLSSTRKFHEYTS 59 78***********************************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.427	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.3E-36	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.45E-34	2	89	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.02E-37	2	81	No hit	No description
PRINTS	PR00404	1.9E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-21	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MGRGKIEIKK IENSTNRQVT YSKRRNGIIK KAKELTVLCD AKISLLMLSS TRKFHEYTSP 60 NTTYAKKMID QYQRTLGVDI WSTHYEAENR GRHERPQFAG VVLLAGEHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	6e-16	1	61	1	61	MEF2C
5f28_B	6e-16	1	61	1	61	MEF2C
5f28_C	6e-16	1	61	1	61	MEF2C
5f28_D	6e-16	1	61	1	61	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016447821.1	2e-54	PREDICTED: floral homeotic protein DEFICIENS-like
Refseq	XP_018627682.1	5e-54	PREDICTED: floral homeotic protein PMADS 1-like isoform X2
Swissprot	Q003J2	1e-43	TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBL	A0A1S3Y6I6	4e-53	A0A1S3Y6I6_TOBAC; floral homeotic protein DEFICIENS-like
TrEMBL	A0A1S4AYJ9	9e-52	A0A1S4AYJ9_TOBAC; floral homeotic protein DEFICIENS-like
STRING	XP_009605879.1	2e-52	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2314	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	2e-38	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]