PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07034g08029.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 1561aa    MW: 170834 Da    PI: 6.4435
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07034g08029.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-0615381561226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                                ++++C+ f+++G Ck G++C + H+
  Niben101Scf07034g08029.1 1538 GQRICK-FYESGRCKKGSSCDYLHP 1561
                                6899**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.44E-984157IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.3E-9106165IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.564110176IPR019787Zinc finger, PHD-finger
SMARTSM002493.1E-7112158IPR001965Zinc finger, PHD-type
CDDcd155681.37E-19112157No hitNo description
PROSITE patternPS013590113173IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475928.28E-20364442IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.102.8E-25366449IPR003121SWIB/MDM2 domain
SMARTSM001515.8E-4368446IPR019835SWIB domain
PfamPF022017.3E-14368441IPR003121SWIB/MDM2 domain
SMARTSM007199.9E-37499609IPR004343Plus-3 domain
PROSITE profilePS5136023.564499632IPR004343Plus-3 domain
SuperFamilySSF1590429.55E-29500628IPR004343Plus-3 domain
PfamPF031266.4E-21504607IPR004343Plus-3 domain
SuperFamilySSF552779.42E-15775839IPR003169GYF domain
PROSITE profilePS5082914.377787840IPR003169GYF domain
CDDcd000724.42E-15787843No hitNo description
SMARTSM004441.4E-10788842IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.4E-14789840IPR003169GYF domain
PfamPF022131.7E-9790831IPR003169GYF domain
PROSITE profilePS5010315.61915361561IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.02E-615361560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-415401560IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1561 aa     Download sequence    Send to blast
MDGGNSSSEL YRPCVQQAHS LSFDGSTVTS MGLQDSEQCS SVQYMNDFQL VGVPAAVTGG  60
APITVAVDGR TSVANLIGDG VEKRKRGRPP RFQTTLAKLP PPKKPREEDE DVCFICFDGG  120
SLVLCDRKGC PKAYHPACIK RDEAFFRSKA KWNCGWHICS VCQKASHYLC YTCTYSLCKA  180
CTKNADYLCV RGNKGFCSTC MRTIMLIENK DQANREMVQV DFDDKSSWEY LFKVYWVILK  240
EKLSLTLDEL LQAKNPWKES DAVHGKRQLM PYGHYVANDG KSIAGKSFDY IEQKKPIEPL  300
ELSKKDPPTA EIRAVSDSGN ASILSSTPLL ELTKPVQELK VQNEDCLRSK QESTVAETSP  360
NGCMEWASKE LLDFVAHVKD GDTSAISQFD VQALLLDYIK RNNLRDPRRK SQIICDLRLK  420
NLFGKPRVGH IEMLKLLEFH FLIKEESKKS AFIPAGIVGT MTSHVEPDDS IDISSSKKRK  480
TRKNGELKMT QINLDEYAAI DAHNINFIYL RRDLMETLAE DVEKFNDRAI GSVVRIRIPG  540
NDQKQEIYRL VHVVGTSKSS EPYKIRDKTV DVLLEVLNLD KKEALSIDSI SNQDFCEDEC  600
RRLRQSIKCG LVKRLTVGEI QKKAMELRAV KLNDNIDLEH EDFLDNSTLR ECIEKLELLK  660
TPEERQRRLL EIPEVHADPK MDPDYESEGD DGGSNYKRKV EHLAPRCTRI SRRDEKLMSS  720
GSLAKEEGSI MARCRMSEKR EACGSNILDK LGNRLTAEQA VDRSGSETSI ASLSMMNSSS  780
ANSIETDKLW HYRDPAGRIQ GPFSVMQLRK WNTSGLFPPE MRIWTNHEHD DSILLTNALK  840
GLFHKEPQVH GKTSSQSREP AASDSRTSVR WSETAGREAP RHPHKANYHS NGNTEFTRMN  900
GLFPSSPQCL DSLKGNSSCS DKPQLSSPVP SSSQREVILA LPRQERGNAN DNCRPATDHG  960
SQNSRGSAMC QINDGCGHNT QSNSRNLGSS LVQNLGSFTS NRYTINMDSG SRLASATKSS  1020
DSFEQKGNMS LPDLPSPTPE TSYGELEAQA AEKLLLLSSV IPVCGSDNDD LPSPTPISDR  1080
ETQGGHAAEN KESVPSSLPV QESGHKWSSA SNSVVGGVQL REIADGCGRS SPAAKPSIEG  1140
WDSGIVSASS QKPAEAVGNN VATSMSNANQ LTAKPSTEEW DSGIVSSSSL KPAEAVGNHV  1200
ASPTSNADQL TAKPLGNHVA SPTSNADQLT AKPCTTEEWD SGLVSVSSTK PAEAVGDHVA  1260
TPTSNADQLT HTSPSHPVSN FFGEPIEFST LAEESVSDLL AEVDAMESQN QNNMGSPTSA  1320
MRCGEEMIPG CRNDCFSPIE ELSPTHDPVR SDALSSTGDL QLPCQSTVTD ETVGASRADA  1380
FDPLRRSGGK SSTSSEGETK SADVLFSQGD AGSNILCTIS QTTAFSAMGR NTGLEGMTSG  1440
RGQAPGNPIW GGPVQGYANV GFSSSMGAAW GNSHMNRGAP FTGNPVWDSQ WRYARERSGG  1500
PREWSLQGGE SGFGRGRSSW NRQQPYGGGG YTRPPPKGQR ICKFYESGRC KKGSSCDYLH  1560
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A5e-14104179981Histone-lysine N-methyltransferase NSD3
4gnd_C5e-14104179981Histone-lysine N-methyltransferase NSD3
4gne_A5e-14104179981Histone-lysine N-methyltransferase NSD3
4gnf_A5e-14104179981Histone-lysine N-methyltransferase NSD3
4gng_A5e-14104179981Histone-lysine N-methyltransferase NSD3
4gng_D5e-14104179981Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600608.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
TrEMBLA0A1S4ACH60.0A0A1S4ACH6_TOBAC; zinc finger CCCH domain-containing protein 44-like isoform X3
STRINGXP_009600608.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21811516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding