PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07044g02004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 73aa    MW: 8681.23 Da    PI: 7.4404
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07044g02004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-0743721443
                              HHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS
                  Homeobox 14 eLeelFeknrypsaeereeLAkklgLterq 43
                              +L e F++n+yp+ +++e+L+k+lgLt  q
  Niben101Scf07044g02004.1 43 RLYESFKENQYPDCDAKEKLSKELGLTAHQ 72
                              6999**********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-64372IPR009057Homeodomain-like
SuperFamilySSF466896.84E-54371IPR009057Homeodomain-like
CDDcd000868.41E-64372No hitNo description
PfamPF000465.0E-54372IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MGEEKTVCHL RRHQLLILEF LLIKDCDFVF TLVMLVFKNF GMRLYESFKE NQYPDCDAKE  60
KLSKELGLTA HQK