PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07063g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 347aa    MW: 39020.3 Da    PI: 5.399
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07063g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.61.3e-28120180259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                               dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs +dp+v+eitY+g+H+++
  Niben101Scf07063g00001.1 120 DDGYSWRKYGQKDILGAKYPRSYYRCTYRhmqNCWTTKQVQRSGDDPTVFEITYKGSHTCH 180
                               8**************************99899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.23114177IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-27115181IPR003657WRKY domain
SuperFamilySSF1182905.1E-25118181IPR003657WRKY domain
SMARTSM007741.7E-38119181IPR003657WRKY domain
PfamPF031061.5E-25120180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDCAFNWKYI TLINELTRGI EHTKQLRSYL SSMASTSENQ ELLLQKILSS YEQSLLILKC  60
SGSAVQSPQP VTPTCGAIEP SVSVDGSPGS EDKKRSFKDH QELINVSKKS AETGFEGPID  120
DGYSWRKYGQ KDILGAKYPR SYYRCTYRHM QNCWTTKQVQ RSGDDPTVFE ITYKGSHTCH  180
QASNSALQPK SPENQEFEKQ ANYETEQYSN EILMNLKANL RVDTNDLDKN ETAACSFSFP  240
PTFSGLIDEN RQFQISHVDE NLMIGGGYSP SFVSPTTPES NYFSISSSCQ MNGFGMVHNM  300
HRSESDLTDI FSANTSSTSS PIVGSEFSLV HFKLDPNFPF DNPRFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-19119179868OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233122.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A1J6KDX00.0A0A1J6KDX0_NICAT; Putative wrky transcription factor 53
STRINGXP_009604630.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.16e-52WRKY family protein