PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07069g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 461aa    MW: 49933.6 Da    PI: 9.0618
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07069g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-19141240198
                               EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                               f+k l+ sd+++ grlvlpkk+ae++    +  ++e+  l+++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+
  Niben101Scf07069g00009.1 141 FEKMLSASDAGRIGRLVLPKKCAEAYfppiS--NPEGLPLKVQDLKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDI 222
                               89**************************543..556667***************9989999999***9.**************** PP

                               EEEEE-SSSEE..EEEEE- CS
                        B3  80 vvFkldgrsefelvvkvfr 98 
                               v+F++++  e++lv++ ++
  Niben101Scf07069g00009.1 223 VTFSRIE-PEGKLVMGCRK 240
                               ****887.56656666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-30137241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-20138237IPR015300DNA-binding pseudobarrel domain
CDDcd100173.40E-24139240No hitNo description
SMARTSM010197.8E-23141241IPR003340B3 DNA binding domain
PROSITE profilePS5086311.082141242IPR003340B3 DNA binding domain
PfamPF023627.9E-17141240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MNGKLKIGVP GTLENGYAGL NHEEPPKSCI SGPPQLSYAK NDLSAPSFSL TIGSACKNES  60
TDHSKVSVSL QQQTTLSTPL GKQLGGHATV DYAGETQVRN SKTRGDGRGK HHLLPRYWPR  120
ITDEELQQIS GDSNSVITPL FEKMLSASDA GRIGRLVLPK KCAEAYFPPI SNPEGLPLKV  180
QDLKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DIVTFSRIEP EGKLVMGCRK  240
ASTTLTADQG SEACSNSNGV VTNGNVNTKS SKFSEEVLAN STEKGFSSTT HVAPADSTIG  300
WAETKMSNDM AMEFLGNNRS TRCKRKSSTL GSKSKRLRID NEDLVELKVT VVQAQGLMRP  360
PSSDAPTVIV IEGCEFEEYE DAPIIGRPAI PSVDHLGVRT VSSGVKFLTV LSFHQDGLVQ  420
KTHGTPRAGS SFRIPLKIIG VCVLGKSRIN SRSSARPTAS Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C1e-671192421124B3 domain-containing transcription repressor VAL1
5yzz_C1e-671192421124B3 domain-containing transcription repressor VAL1
5z00_C1e-671192421124B3 domain-containing transcription repressor VAL1
5z00_G1e-671192421124B3 domain-containing transcription repressor VAL1
5z00_K1e-671192421124B3 domain-containing transcription repressor VAL1
5z00_M1e-671192421124B3 domain-containing transcription repressor VAL1
6j9a_A2e-671192422125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794883.10.0PREDICTED: B3 domain-containing protein Os07g0563300 isoform X2
RefseqXP_009794885.10.0PREDICTED: B3 domain-containing protein Os07g0563300 isoform X4
SwissprotQ0D5G41e-108Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1U7XVC10.0A0A1U7XVC1_NICSY; B3 domain-containing protein Os07g0563300 isoform X2
TrEMBLA0A1U7Y7T80.0A0A1U7Y7T8_NICSY; B3 domain-containing protein Os07g0563300 isoform X4
STRINGXP_009794882.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71282126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-100HSI2-like 1