PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07105g04007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 135aa MW: 15439.9 Da PI: 4.8503

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07105g04007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.9	3.4e-20	17	67	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrd ++ng r++lg++ taeeAa+a+++a+ +++g Niben101Scf07105g04007.1 17 RYRGVRKRP-WGKYAAEIRDTNKNG--VRVWLGTYATAEEAARAYDKAAFEMRG 67 6******.******65676..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.4E-14	17	67	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-23	17	77	IPR016177	DNA-binding domain
CDD	cd00018	1.88E-28	17	76	No hit	No description
SMART	SM00380	3.0E-36	17	81	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.8E-31	17	77	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.973	17	75	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.7E-11	18	29	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.7E-11	41	57	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MNQDNSNDNK ESREEVRYRG VRKRPWGKYA AEIRDTNKNG VRVWLGTYAT AEEAARAYDK 60 AAFEMRGRFA VLNFPHEYPS FSSSSCPLSS SSSCSSSYSS VQNVNEVKEV IEFEYLDDNL 120 LEELLGLESD KNQFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-35	14	120	11	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009785394.1	1e-60	PREDICTED: ethylene-responsive transcription factor ERF098-like
Refseq	XP_016457275.1	1e-60	PREDICTED: ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	1e-38	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A2G2X5X7	2e-59	A0A2G2X5X7_CAPBA; Ethylene-responsive transcription factor
STRING	XP_009785394.1	5e-60	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43410.1	2e-21	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]