PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07109g00007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 205aa MW: 23413.1 Da PI: 7.7005

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07109g00007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.7	3.1e-19	14	61	1	47
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEde+l+ +++ +G g +W++Ia +++ gRt++++k++w+++ Niben101Scf07109g00007.1 14 KGAWTKEEDERLIAYIRNHGEGcwRWSLIAGRLP-GRTDNEIKNYWNTH 61 79******************************.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.21E-17	3	69	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-23	5	69	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.555	9	66	IPR017930	Myb domain
SMART	SM00717	5.8E-14	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.88E-14	16	62	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLIAYIR NHGEGCWRWS LIAGRLPGRT DNEIKNYWNT 60 HIRRKLLSRG IDPTTHRPVN EPNTTPKITT ISFTARNNKD EEDQKMINVK GELSGLSQED 120 EISSNSSQFQ ELQCPDLNLE LRISPPYQQN YQNDQDLKPS ARCFACSLGI QNSKDCSCSK 180 NNIASYDFLG LKTNGVLDYR TLETK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019260747.1	1e-136	PREDICTED: myb-related protein 308-like
Swissprot	P81393	1e-67	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A314LEE7	1e-134	A0A314LEE7_NICAT; Transcription repressor myb4
STRING	XP_009804432.1	1e-134	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34990.1	7e-61	myb domain protein 32

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]