PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07162g03016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 258aa    MW: 29531.7 Da    PI: 8.2184
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07162g03016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.54.4e-09121195778
                       NAM   7 FhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.kkvka.eekewyfFskrdkkyatgkrknrat 78 
                               FhPt+ el+ ++Lk+ ++g++l+ e   ++ +diy    Pw++  ++ ++ eek  y F++ +k++++ +r +r+ 
  Niben101Scf07162g03016.1 121 FHPTEAELI-NFLKRFLKGEPLPSECPnFQLADIYGDqPPWKIFgANSDHlEEKVRYIFTRLKKQKSKHTRVRRTC 195
                               *********.9**********88755559999***87368***7333333255667****************9964 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF130411.6E-7552IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.734535IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.6E-6841IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.9674108IPR002885Pentatricopeptide repeat
SuperFamilySSF1019414.05E-9120244IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MPLRDVASWS AMIAGYIKNG HWGEGVALFQ EMVMFEQLKP DQVTIGPILA GCSEMGSIER  60
VNERVMNVVR PENDGGVYTL ISDLYVLGGK WAEAERVRQL MLHQHVRKAR GIRVGVSWVF  120
FHPTEAELIN FLKRFLKGEP LPSECPNFQL ADIYGDQPPW KIFGANSDHL EEKVRYIFTR  180
LKKQKSKHTR VRRTCAERDM KSPNQTFSYQ EPQGNCGSNT SVGDDFFIEN NTPKEDIVVC  240
RIKKNTRSEK NHGVNMEE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019241184.14e-67PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A1J6KCJ09e-66A0A1J6KCJ0_NICAT; Nac domain-containing protein 78
STRINGXP_009801092.14e-65(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386