PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07162g03025.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 259aa    MW: 30498.7 Da    PI: 8.1217
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07162g03025.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM691.3e-21131413128
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyW 83 
                               +G+rFhPt+ el+ ++Lk+ ++g+ l+ e   ++ +diy    Pw++  ++  + eek  y F++ +k++++ +r +r+ ++g+W
  Niben101Scf07162g03025.1  13 MGVRFHPTEAELI-NFLKRFLKGELLPSECPnFQLADIYGDqPPWEIFgANSGHpEEKVRYIFTRLKKQKNEYTRVRRTCANGTW 96 
                               7************.9*********977755459999***87368***7333323255566************************* PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k +    ++++ kg++vg ++ + f + ++++ ++  W+m ey++
  Niben101Scf07162g03025.1  97 KGQTGIDPIKNGKGTVVGFRRYFKFQSRSKEREHNKIWLMREYSV 141
                               *888889****9**************99999999*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-263163IPR003441NAC domain
PROSITE profilePS5100525.98811164IPR003441NAC domain
PfamPF023656.8E-1413141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSMVPAVRRR CIMGVRFHPT EAELINFLKR FLKGELLPSE CPNFQLADIY GDQPPWEIFG  60
ANSGHPEEKV RYIFTRLKKQ KNEYTRVRRT CANGTWKGQT GIDPIKNGKG TVVGFRRYFK  120
FQSRSKEREH NKIWLMREYS VGDDFFRENN IPKEDIVVCR IKKNIRSKKI HGVNMEKQDV  180
PKTIEAMLHE TNEDYCTTVQ TATICQAADQ HQVMHETQKM NEYNNYSNII NDYSNYQQEE  240
VNWADDMLIG IDEFGDIIW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591317.21e-162PREDICTED: NAC domain-containing protein 78-like
TrEMBLB3VK721e-157B3VK72_TOBAC; NAC transcription factor
STRINGXP_009591317.11e-161(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.15e-14NAC domain containing protein 2